guix-science, branch rekado/pr-restore-and-update-python-anvio Free scientific packages for GNU Guix. bioinformatics: python-anvio: Switch to G-exps. 2025-11-18T13:34:08+00:00 Romain GARBAGE romain.garbage@inria.fr 2025-11-18T13:00:51+00:00 f08e8f992dc083e002aca879ca0a9b868c20778b * guix-science/packages/bioinformatics.scm (python-anvio): Switch to G-exps. Improve style. 
* guix-science/packages/bioinformatics.scm (python-anvio): Switch to
G-exps. Improve style.
bioinformatics: python-anvio: Update to 8. 2025-11-18T13:34:08+00:00 Ricardo Wurmus rekado@elephly.net 2025-11-07T15:11:24+00:00 793d7761c70959eb18ba8e2c96ae0f8bfe7ff616 * guix-science/packages/bioinformatics.scm (python-anvio): Update to 8. [arguments]: Add phase 'python-3.14-compatibility; update 'relax-requirements. [propagated-inputs]: Add python-networkx and python-rich-argparse. 
* guix-science/packages/bioinformatics.scm (python-anvio): Update to 8.
[arguments]: Add phase 'python-3.14-compatibility; update
'relax-requirements.
[propagated-inputs]: Add python-networkx and python-rich-argparse.
Revert "bioinformatics: Remove python-anvio." 2025-11-18T13:34:07+00:00 Ricardo Wurmus rekado@elephly.net 2025-11-07T14:17:27+00:00 7afc5866256289f2377e4bd89611caedbcc01112 This reverts commit d7aa5ace3a4e1132f6d8e0a244942130547c4779. 
This reverts commit d7aa5ace3a4e1132f6d8e0a244942130547c4779.
python-xyz: Add python-paste. 2025-11-18T13:33:57+00:00 Ricardo Wurmus rekado@elephly.net 2025-11-07T15:11:03+00:00 d647696c83c7e2fae2f6da82319a5ff7ace35128 * guix-science/packages/python-xyz.scm (python-paste): New variable. 
* guix-science/packages/python-xyz.scm (python-paste): New variable.
python-xyz: python-flatten-dict: Don't depend on python-pathlib2. 2025-11-18T11:27:03+00:00 Romain GARBAGE romain.garbage@inria.fr 2025-11-18T09:30:52+00:00 91960739746b873c80917873461ab3dad7f80b0e Fixes #331. python-pathlib2 was removed upstream (see https://codeberg.org/guix/guix/commit/31b0d02fa551f9f2f601e6f34eb64a16fab0067d and https://codeberg.org/guix/guix/pulls/2084). Current python version has the required functionality. * guix-science/packages/python-xyz.scm (python-flatten-dict): Don't depend on python-pathlib2. 
Fixes #331.

python-pathlib2 was removed upstream (see
https://codeberg.org/guix/guix/commit/31b0d02fa551f9f2f601e6f34eb64a16fab0067d
and https://codeberg.org/guix/guix/pulls/2084).

Current python version has the required functionality.

* guix-science/packages/python-xyz.scm (python-flatten-dict): Don't
depend on python-pathlib2.
neuroscience: ants: Update to 2.6.3. 2025-11-16T11:47:29+00:00 Ghislain Vaillant ghislain.vaillant@inria.fr 2025-11-13T14:54:20+00:00 31f382b22efaf79a2ebbff8806f3a549ea0d96dc * guix-science/packages/neuroscience.scm (ants): Update to 2.6.3. 
* guix-science/packages/neuroscience.scm (ants): Update to 2.6.3.
neuroscience: python-templateflow: Enable tests. 2025-11-14T10:07:15+00:00 Ghislain Vaillant ghislain.vaillant@inria.fr 2025-11-14T10:05:31+00:00 b0646c747385ca12e2285aba2e85b1fda2c0d41f * guix-science/packages/neuroscience.scm (python-templateflow): Enable tests. 
* guix-science/packages/neuroscience.scm (python-templateflow): Enable tests.
neuroscience: python-templateflow: Update to 25.1.1. 2025-11-14T10:07:14+00:00 Ghislain Vaillant ghislain.vaillant@inria.fr 2025-11-14T09:53:38+00:00 ace5b95aebdeea2879511532239282643df91588 * guix-science/packages/neuroscience.scm (python-templateflow): Update to 25.1.1. [native-inputs]: Add python-platformdirs. 
* guix-science/packages/neuroscience.scm (python-templateflow): Update to 25.1.1.
  [native-inputs]: Add python-platformdirs.
neuroscience: python-templateflow: Switch to git. 2025-11-14T10:07:14+00:00 Ghislain Vaillant ghislain.vaillant@inria.fr 2025-11-14T09:51:56+00:00 001405de578af077202eee45e10fd9fab05a22aa * guix-science/packages/neuroscience.scm (python-templateflow): Switch to git. 
* guix-science/packages/neuroscience.scm (python-templateflow): Switch to git.
neuroscience: Add dcm2bids. 2025-11-13T08:50:52+00:00 Ghislain Vaillant ghislain.vaillant@inria.fr 2025-11-13T07:48:28+00:00 83fceaa743b326ca354ca47b6297098a4cc4e1b2 * guix-science/packages/neuroscience.scm (dcm2bids): New variable. 
* guix-science/packages/neuroscience.scm (dcm2bids): New variable.