diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2025-02-07 10:30:07 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-02-07 10:30:07 +0100 |
| commit | 67d95731253a3703706efc33456bac78e9eee261 (patch) | |
| tree | 6a431eb78010e3017fb86109c06f2a0bd39b682c | |
| parent | 67bec9b0b21723625ec8cd87c62dfea7aedf100b (diff) | |
bioinformatics: Remove r-music.
This is now available in Guix proper.
* guix-science/packages/bioinformatics.scm (r-music): Remove variable.
| -rw-r--r-- | guix-science/packages/bioinformatics.scm | 32 |
1 files changed, 0 insertions, 32 deletions
diff --git a/guix-science/packages/bioinformatics.scm b/guix-science/packages/bioinformatics.scm index 02a49af..143bad4 100644 --- a/guix-science/packages/bioinformatics.scm +++ b/guix-science/packages/bioinformatics.scm | |||
| @@ -378,38 +378,6 @@ analysis package.") | |||
| 378 | annotation of Metacell models.") | 378 | annotation of Metacell models.") |
| 379 | (license license:expat)))) | 379 | (license license:expat)))) |
| 380 | 380 | ||
| 381 | (define-public r-music | ||
| 382 | (let ((commit "0a3e3af45d4bd018939013660a3e83e580fa3bac") | ||
| 383 | (revision "1")) | ||
| 384 | (package | ||
| 385 | (name "r-music") | ||
| 386 | (version (git-version "1.0.0" revision commit)) | ||
| 387 | (source | ||
| 388 | (origin | ||
| 389 | (method git-fetch) | ||
| 390 | (uri (git-reference | ||
| 391 | (url "https://github.com/xuranw/MuSiC") | ||
| 392 | (commit commit))) | ||
| 393 | (file-name (git-file-name name version)) | ||
| 394 | (sha256 | ||
| 395 | (base32 "14i9ihd29disbjx05hfm6hj7jjj3ydjxqyzxi9i8aa96gq662gfm")))) | ||
| 396 | (properties `((upstream-name . "MuSiC"))) | ||
| 397 | (build-system r-build-system) | ||
| 398 | (propagated-inputs (list r-biobase | ||
| 399 | r-ggplot2 | ||
| 400 | r-matrix | ||
| 401 | r-mcmcpack | ||
| 402 | r-nnls | ||
| 403 | r-singlecellexperiment | ||
| 404 | r-toast)) | ||
| 405 | (native-inputs (list r-knitr)) | ||
| 406 | (home-page "https://github.com/xuranw/MuSiC") | ||
| 407 | (synopsis "Multi-subject single cell deconvolution") | ||
| 408 | (description | ||
| 409 | "MuSiC is a deconvolution method that utilizes cross-subject | ||
| 410 | scRNA-seq to estimate cell type proportions in bulk RNA-seq data.") | ||
| 411 | (license license:gpl3+)))) | ||
| 412 | |||
| 413 | ;; Depends on r-diagrammer, which is not in Guix proper yet due to | 381 | ;; Depends on r-diagrammer, which is not in Guix proper yet due to |
| 414 | ;; minified JavaScript. | 382 | ;; minified JavaScript. |
| 415 | (define-public r-nichenetr | 383 | (define-public r-nichenetr |
