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authorRicardo Wurmus <rekado@elephly.net>2025-02-07 10:30:07 +0100
committerRicardo Wurmus <rekado@elephly.net>2025-02-07 10:30:07 +0100
commit67d95731253a3703706efc33456bac78e9eee261 (patch)
tree6a431eb78010e3017fb86109c06f2a0bd39b682c
parent67bec9b0b21723625ec8cd87c62dfea7aedf100b (diff)
bioinformatics: Remove r-music.
This is now available in Guix proper. * guix-science/packages/bioinformatics.scm (r-music): Remove variable.
-rw-r--r--guix-science/packages/bioinformatics.scm32
1 files changed, 0 insertions, 32 deletions
diff --git a/guix-science/packages/bioinformatics.scm b/guix-science/packages/bioinformatics.scm
index 02a49af..143bad4 100644
--- a/guix-science/packages/bioinformatics.scm
+++ b/guix-science/packages/bioinformatics.scm
@@ -378,38 +378,6 @@ analysis package.")
378annotation of Metacell models.") 378annotation of Metacell models.")
379 (license license:expat)))) 379 (license license:expat))))
380 380
381(define-public r-music
382 (let ((commit "0a3e3af45d4bd018939013660a3e83e580fa3bac")
383 (revision "1"))
384 (package
385 (name "r-music")
386 (version (git-version "1.0.0" revision commit))
387 (source
388 (origin
389 (method git-fetch)
390 (uri (git-reference
391 (url "https://github.com/xuranw/MuSiC")
392 (commit commit)))
393 (file-name (git-file-name name version))
394 (sha256
395 (base32 "14i9ihd29disbjx05hfm6hj7jjj3ydjxqyzxi9i8aa96gq662gfm"))))
396 (properties `((upstream-name . "MuSiC")))
397 (build-system r-build-system)
398 (propagated-inputs (list r-biobase
399 r-ggplot2
400 r-matrix
401 r-mcmcpack
402 r-nnls
403 r-singlecellexperiment
404 r-toast))
405 (native-inputs (list r-knitr))
406 (home-page "https://github.com/xuranw/MuSiC")
407 (synopsis "Multi-subject single cell deconvolution")
408 (description
409 "MuSiC is a deconvolution method that utilizes cross-subject
410scRNA-seq to estimate cell type proportions in bulk RNA-seq data.")
411 (license license:gpl3+))))
412
413;; Depends on r-diagrammer, which is not in Guix proper yet due to 381;; Depends on r-diagrammer, which is not in Guix proper yet due to
414;; minified JavaScript. 382;; minified JavaScript.
415(define-public r-nichenetr 383(define-public r-nichenetr