neuroscience: Add python-nipype.

* guix-science/packages/neuroscience.scm (python-nipype): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>

1 files changed, 59 insertions, 0 deletions

diff --git a/guix-science/packages/neuroscience.scm b/guix-science/packages/neuroscience.scm
index 62527e9..ebd1316 100644
--- a/guix-science/packages/neuroscience.scm
+++ b/guix-science/packages/neuroscience.scm
@@ -149,3 +149,62 @@ objects more effectively.")
     (description "This module provides simple, consistent access to package resources.")
     (license license:asl2.0)))
 
+(define-public python-nipype
+  (package
+    (name "python-nipype")
+    (version "1.9.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "nipype" version))
+        (sha256
+          (base32 "02vd97svg4l8rvpvwa8k42nypr6r81g283716qsv8sp8sa788134"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases #~(modify-phases %standard-phases
+                   ;; Some tests contains a hardcoded absolute path to
+                   ;; bash.
+                   (add-after 'unpack 'fix-path
+                     (lambda* (#:key native-inputs inputs #:allow-other-keys)
+                       (substitute* "nipype/pipeline/engine/tests/test_nodes.py"
+                         (("/bin/bash")
+                          (search-input-file (or native-inputs inputs)
+                                             "/bin/bash"))))))))
+    (native-inputs (list python-setuptools
+                         python-wheel
+
+                         python-pytest
+                         python-pytest-cov
+                         python-pytest-timeout
+                         python-pytest-env
+                         python-coverage
+                         python-pytest-xdist
+                         python-sphinx
+                         python-pytest-doctestplus
+                         which
+                         python-pandas))
+    (propagated-inputs (list python-acres
+                             python-click
+                             python-dateutil
+                             python-etelemetry
+                             python-filelock
+                             python-looseversion
+                             python-networkx
+                             python-nibabel
+                             python-numpy
+                             python-packaging
+                             python-prov
+                             python-puremagic
+                             python-pydot
+                             (lookup-package-propagated-input python-prov "python-rdflib")
+                             python-scipy
+                             python-simplejson
+                             python-traits))
+    (home-page "https://nipype.readthedocs.io/en/latest/index.html")
+    (synopsis "Neuroimaging in Python: Pipelines and Interfaces")
+    (description "Nipype provides a uniform interface to existing neuroimaging software
+and facilitates interaction between these packages within a single
+workflow.  Nipype provides an environment that encourages interactive
+exploration of algorithms from different packages.")
+    (license license:asl2.0)))