neuroscience: Add dcm2bids.

* guix-science/packages/neuroscience.scm (dcm2bids): New variable.

1 files changed, 38 insertions, 0 deletions

diff --git a/guix-science/packages/neuroscience.scm b/guix-science/packages/neuroscience.scm
index 9b76e5d..27e19d0 100644
--- a/guix-science/packages/neuroscience.scm
+++ b/guix-science/packages/neuroscience.scm
@@ -229,6 +229,44 @@ manipulation, such as thresholding and resampling.  The tool can also be used to
 obtain information about image files.")
      (license license:gpl3))))
 
+(define-public dcm2bids
+  (package
+    (name "dcm2bids")
+    (version "3.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/UNFmontreal/Dcm2Bids")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1p57smyrbmi6km1af8m69c2r6yg2f6faqxzjwpwzgpqwayygynwi"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list
+         ;; Ignore buggy tests.
+         "--deselect=tests/test_helper.py::test_helper")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-requirements
+            (lambda _
+              (substitute* "setup.py"
+                ;; Not a runtime requirement.
+                (("'packaging.*'")
+                 "")))))))
+    (inputs (list dcm2niix))
+    (native-inputs (list python-pybids python-pytest
+                         python-pytest-console-scripts python-setuptools))
+    (home-page "https://unfmontreal.github.io/Dcm2Bids/")
+    (synopsis "DICOM to BIDS converter")
+    (description
+     "Convert data from DICOM and organise the resulting NIfTI files into
+@acronym{BIDS, Brain Imaging Data Structure}.")
+    (license license:gpl3)))
+
 (define-public dcm2niix
   (package
    (name "dcm2niix")