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authorGhislain Vaillant <ghislain.vaillant@inria.fr>2026-02-20 12:31:39 +0100
committerGhislain Vaillant <ghislain.vaillant@inria.fr>2026-02-21 14:45:52 +0100
commit03b2cbd94696ad190efd0ea9d2c9cf4d99b3eda6 (patch)
tree1a732bb5676a5cedbc4296777db0576b58cc5f0e
parente02db7ef141becda42c9e091ff38355d79fe714a (diff)
bioinformatics: cat: Switch to git.
* guix-science/packages/bioinformatics.scm (cat) [source]: Switch to git, update remote. [home-page]: Change to new organisation.
-rw-r--r--guix-science/packages/bioinformatics.scm19
1 files changed, 10 insertions, 9 deletions
diff --git a/guix-science/packages/bioinformatics.scm b/guix-science/packages/bioinformatics.scm
index fe6dd01..1d6172e 100644
--- a/guix-science/packages/bioinformatics.scm
+++ b/guix-science/packages/bioinformatics.scm
@@ -2757,14 +2757,15 @@ This package provides IQ-TREE version 3.")
2757 (package 2757 (package
2758 (name "cat") 2758 (name "cat")
2759 (version "5.2.3") 2759 (version "5.2.3")
2760 (source (origin 2760 (source
2761 (method url-fetch) 2761 (origin
2762 (uri (string-append 2762 (method git-fetch)
2763 "https://github.com/dutilh/CAT/archive/v" 2763 (uri (git-reference
2764 version".tar.gz")) 2764 (url "https://github.com/MGXlab/CAT_pack")
2765 (sha256 2765 (commit (string-append "v" version))))
2766 (base32 2766 (file-name (git-file-name name version))
2767 "16wjl8ng6dfz60phvdrj1bq1mp8nm42x61mh0idgrlzbq0lfpa0r")))) 2767 (sha256
2768 (base32 "0gmjzk1ya36crj949sxf5djlkcxanvp0g7i7a8xsw85rlq2k857m"))))
2768 (build-system gnu-build-system) 2769 (build-system gnu-build-system)
2769 (arguments 2770 (arguments
2770 (list 2771 (list
@@ -2793,7 +2794,7 @@ This package provides IQ-TREE version 3.")
2793 `("GUIX_PYTHONPATH" ":" = (,share "$GUIX_PYTHONPATH")))))))))) 2794 `("GUIX_PYTHONPATH" ":" = (,share "$GUIX_PYTHONPATH"))))))))))
2794 (inputs 2795 (inputs
2795 (list diamond prodigal python)) 2796 (list diamond prodigal python))
2796 (home-page "https://github.com/dutilh/CAT") 2797 (home-page "https://github.com/MGXlab/CAT_pack")
2797 (synopsis "Tool for taxonomic classification of contigs and metagenome-assembled genomes") 2798 (synopsis "Tool for taxonomic classification of contigs and metagenome-assembled genomes")
2798 (description "Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) 2799 (description "Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT)
2799are pipelines for the taxonomic classification of long DNA sequences and 2800are pipelines for the taxonomic classification of long DNA sequences and