1 files changed, 38 insertions, 37 deletions

diff --git a/guix-science/packages/bioinformatics.scm b/guix-science/packages/bioinformatics.scm
index 1525deb..aaa6124 100644
--- a/guix-science/packages/bioinformatics.scm
+++ b/guix-science/packages/bioinformatics.scm
@@ -1051,9 +1051,9 @@ primer3 does it.")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://github.com/merenlab/anvio")
-                    (commit (string-append "v" version))
-                    (recursive? #t)))
+                     (url "https://github.com/merenlab/anvio")
+                     (commit (string-append "v" version))
+                     (recursive? #t)))
               (file-name (git-file-name name version))
               (sha256
                (base32
@@ -1062,41 +1062,41 @@ primer3 does it.")
     (arguments
      (list
       #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'python-3.14-compatibility
-           (lambda _
-             (substitute* '("bin/anvi-export-structures"
-                            "bin/anvi-get-sequences-for-hmm-hits"
-                            "anvio/cogs.py"
-                            "anvio/dbops.py"
-                            "anvio/drivers/emapper.py"
-                            "anvio/fastalib.py"
-                            "anvio/filesnpaths.py"
-                            "anvio/interactive.py"
-                            "anvio/kegg.py"
-                            "anvio/mcgclassifier.py"
-                            "anvio/merger.py"
-                            "anvio/panops.py"
-                            "anvio/parsers/kaiju.py"
-                            "anvio/profiler.py"
-                            "anvio/programs.py"
-                            "anvio/samplesops.py"
-                            "anvio/structureops.py"
-                            "anvio/utils.py"
-                            "anvio/variabilityops.py"
-                            "anvio/workflows/__init__.py")
-               (("'rU'") "'r'"))))
-         (add-after 'unpack 'relax-requirements
-           (lambda _
-             (substitute* "requirements.txt"
-               ;; This is questionable.  Pandas 0.25 is really quite old.  Using
-               ;; version 1.4.x is a gamble.
-               (("pandas==.*") "pandas\n")
-               (("numpy<=.*") "numpy\n")
-               (("scikit-learn==.*") "scikit-learn\n")))))
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'python-3.14-compatibility
+            (lambda _
+              (substitute* '("bin/anvi-export-structures"
+                             "bin/anvi-get-sequences-for-hmm-hits"
+                             "anvio/cogs.py"
+                             "anvio/dbops.py"
+                             "anvio/drivers/emapper.py"
+                             "anvio/fastalib.py"
+                             "anvio/filesnpaths.py"
+                             "anvio/interactive.py"
+                             "anvio/kegg.py"
+                             "anvio/mcgclassifier.py"
+                             "anvio/merger.py"
+                             "anvio/panops.py"
+                             "anvio/parsers/kaiju.py"
+                             "anvio/profiler.py"
+                             "anvio/programs.py"
+                             "anvio/samplesops.py"
+                             "anvio/structureops.py"
+                             "anvio/utils.py"
+                             "anvio/variabilityops.py"
+                             "anvio/workflows/__init__.py")
+                (("'rU'") "'r'"))))
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "requirements.txt"
+                ;; This is questionable.  Pandas 0.25 is really quite old.  Using
+                ;; version 1.4.x is a gamble.
+                (("pandas==.*") "pandas\n")
+                (("numpy<=.*") "numpy\n")
+                (("scikit-learn==.*") "scikit-learn\n")))))
       #:test-flags
       ;; These fail because the test files are not in the expected directory.
-      '(list "-k" "not test_fasta_splitting \
+      #~(list "-k" "not test_fasta_splitting \
 and not test_more_parts_than_sequences \
 and not test_single_fasta_gives_one_split")))
     (propagated-inputs
@@ -1125,7 +1125,8 @@ and not test_single_fasta_gives_one_split")))
            python-statsmodels
            python-tabulate
            snakemake))
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest
+                         python-setuptools))
     (home-page "https://anvio.org")
     (synopsis "Analysis and visualization platform for 'omics data")
     (description