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2025-11-18bioinformatics: python-anvio: Switch to G-exps.rekado/pr-restore-and-update-python-anvioRomain GARBAGE1-37/+38
* guix-science/packages/bioinformatics.scm (python-anvio): Switch to G-exps. Improve style.
2025-11-18bioinformatics: python-anvio: Update to 8.Ricardo Wurmus1-5/+31
* guix-science/packages/bioinformatics.scm (python-anvio): Update to 8. [arguments]: Add phase 'python-3.14-compatibility; update 'relax-requirements. [propagated-inputs]: Add python-networkx and python-rich-argparse.
2025-11-18Revert "bioinformatics: Remove python-anvio."Ricardo Wurmus1-0/+69
This reverts commit d7aa5ace3a4e1132f6d8e0a244942130547c4779.
2025-11-18python-xyz: Add python-paste.Ricardo Wurmus1-0/+42
* guix-science/packages/python-xyz.scm (python-paste): New variable.
2025-11-18python-xyz: python-flatten-dict: Don't depend on python-pathlib2.Romain GARBAGE1-1/+1
Fixes #331. python-pathlib2 was removed upstream (see https://codeberg.org/guix/guix/commit/31b0d02fa551f9f2f601e6f34eb64a16fab0067d and https://codeberg.org/guix/guix/pulls/2084). Current python version has the required functionality. * guix-science/packages/python-xyz.scm (python-flatten-dict): Don't depend on python-pathlib2.
2025-11-16neuroscience: ants: Update to 2.6.3.Ghislain Vaillant1-2/+2
* guix-science/packages/neuroscience.scm (ants): Update to 2.6.3.
2025-11-14neuroscience: python-templateflow: Enable tests.Ghislain Vaillant1-2/+12
* guix-science/packages/neuroscience.scm (python-templateflow): Enable tests.
2025-11-14neuroscience: python-templateflow: Update to 25.1.1.Ghislain Vaillant1-4/+7
* guix-science/packages/neuroscience.scm (python-templateflow): Update to 25.1.1. [native-inputs]: Add python-platformdirs.
2025-11-14neuroscience: python-templateflow: Switch to git.Ghislain Vaillant1-4/+13
* guix-science/packages/neuroscience.scm (python-templateflow): Switch to git.
2025-11-13neuroscience: Add dcm2bids.Ghislain Vaillant1-0/+38
* guix-science/packages/neuroscience.scm (dcm2bids): New variable.
2025-11-07hpc-runtime: Add starpu.Romain GARBAGE2-0/+174
* guix-science/packages/hpc-runtime.scm: New file. (starpu): New variable. * patches/starpu-skip-apps.patch: New file.
2025-11-07electronics: ghdl-yosys-plugin: Fix search-path.Cayetano Santos1-0/+1
* guix-science/packages/electronics.scm (ghdl-yosys-plugin)[native-search-paths]: Add file-type. Signed-off-by: Romain GARBAGE <romain.garbage@inria.fr>
2025-11-07bioinformatics: Remove python-anvio.Romain GARBAGE1-69/+0
This package, which doesn't build since April 2025, depends on a package that was removed upstream. * guix-science/packages/bioinformatics.scm (python-anvio): Remove variable.
2025-11-07python-xyz: Add python-questionary.Ghislain Vaillant1-0/+21
* guix-science/packages/python-xyz.scm (python-questionary): New variable.
2025-11-07python-xyz: Add python-nvidia-ml-py.Ghislain Vaillant1-0/+20
* guix-science/packages/python-xyz.scm (python-nvidia-ml-py): New variable.
2025-11-07python-xyz: Add python-fief-client.Ghislain Vaillant1-0/+53
* guix-science/packages/python-xyz.scm (python-fief-client): New variable. * guix-science/packages/python-xyz.scm: Import python-check and python-web.
2025-11-07python-xyz: Add python-codecarbon.Ghislain Vaillant1-0/+57
* guix-science/packages/python-xyz.scm (python-codecarbon): New variable. * guix-science/packages/python-xyz.scm: Import monitoring.
2025-11-06gnu: ghdl-yosys-plugin: Update to 0.0-4.ad5be74.Cayetano Santos1-3/+9
* guix-science/packages/electronics.scm (ghdl-yosys-plugin): Update to 0.0-4.ad5be74. [native-search-paths]: Set separator to #f. [arguments]<#:phases>: Delete failing tests in ’testsuite phase. Signed-off-by: Romain GARBAGE <romain.garbage@inria.fr>
2025-11-06neuroscience: Add python-surfa.Ghislain Vaillant1-0/+29
* guix-science/packages/neuroscience.scm (python-surfa): New variable.
2025-11-05neuroscience: python-tedana: Update to 25.1.0.Ghislain Vaillant1-15/+20
* guix-science/packages/neuroscience.scm (python-tedana): Update to 25.1.0. [source]: Switch to git.
2025-11-05neuroscience: python-nibabies: Update to 25.2.1.Ghislain Vaillant1-5/+32
* guix-science/packages/neuroscience.scm (python-nibabies): Update to 25.2.1. [source]: Switch to git. [arguments]: Enable check.
2025-11-05version-control: Add python-dvc-s3.Ghislain Vaillant1-0/+36
* guix-science/packages/version-control.scm (python-dvc-s3): New variable.
2025-11-05version-control: Add python-dvc-ssh.Ghislain Vaillant1-0/+37
* guix-science/packages/version-control.scm (python-dvc-ssh): New variable.
2025-11-05python-xyz: Add python-hydra-core.Ghislain Vaillant1-0/+63
* guix-science/packages/python-xyz.scm (python-hydra-core): New variable. * guix-science/packages/python-xyz.scm: Import java.
2025-11-05version-control: Add python-dvc-task.Ghislain Vaillant1-0/+47
* guix-science/packages/version-control.scm (python-dvc-task): New variable. * guix-science/packages/version-control.scm: Import time.
2025-11-05version-control: Add python-dvc-studio-client.Ghislain Vaillant1-0/+39
* guix-science/packages/version-control.scm (python-dvc-studio-client): New variable.
2025-11-05version-control: Add python-dvc-render.Ghislain Vaillant1-0/+38
* guix-science/packages/version-control.scm (python-dvc-render): New variable.
2025-11-05version-control: Add python-dvc-http.Ghislain Vaillant1-0/+31
* guix-science/packages/version-control.scm (python-dvc-http): New variable.
2025-11-05version-control: Add python-gto.Ghislain Vaillant1-0/+47
* guix-science/packages/version-control.scm (python-gto): New variable.
2025-11-05version-control: Add python-iterative-telemetry.Ghislain Vaillant1-0/+35
* guix-science/packages/version-control.scm: New variable.
2025-11-05python-xyz: Add python-flatten-dict.Ghislain Vaillant1-0/+23
* guix-science/packages/python-xyz.scm (python-flatten-dict): New variable.
2025-11-05version-control: Add python-pytest-test-utils.Ghislain Vaillant1-0/+30
* guix-science/packages/version-control.scm (python-pytest-test-utils): New variable. * guix-science/packages/version-control.scm: Import gexp.
2025-11-05version-control: Add python-scmrepo.Ghislain Vaillant1-0/+60
* guix-science/packages/version-control.scm (python-scmrepo): New variable. * guix-science/packages/version-control.scm: Import python-check, python-crypto ssh and version-control.
2025-11-05version-control: Add dvc.Ghislain Vaillant1-0/+138
* guix-science/packages/version-control.scm: New module. * guix-science/packages/version-control.scm (dvc): New variable. * guix-science/packages/version-control.scm (python-dvc): New private variable.
2025-11-05chemistry: Add python-plumed.Romain GARBAGE1-0/+34
* guix-science/packages/chemistry.scm (python-plumed): New variable.
2025-11-05chemistry: Add plumed.Romain GARBAGE1-2/+57
* guix-science/packages/chemistry.scm (plumed): New variable.
2025-11-04benchmark: Add netlib-hpl.Romain GARBAGE2-0/+71
* guix-science/packages/benchmark.scm (netlib-hpl): New variable.
2025-11-04benchmark: Add npb-openmpi.Romain GARBAGE1-0/+16
* guix-science/packages/benchmark.scm (npb-openmpi): New variable.
2025-11-04benchmark: Add npb-openmp.Romain GARBAGE1-0/+91
* guix-science/packages/benchmark.scm (npb-openmp): New variable.
2025-11-04benchmark: Add mpigraph.Romain GARBAGE1-1/+49
* guix-science/packages/benchmark.scm (mpigraph): New variable.
2025-11-04benchmark: Add gpcnet.Romain GARBAGE1-0/+55
* guix-science/packages/benchmark.scm: New file. (gpcnet): New variable.
2025-11-04python: python-ml-dtypes: Remove.Cayetano Santos1-53/+0
We have the same (updated) package in Guix. * guix-science/packages/python.scm (python-ml-dtypes): Delete variable. Signed-off-by: Romain GARBAGE <romain.garbage@inria.fr>
2025-11-04python: eigen-for-python-ml-dtypes: Remove.Cayetano Santos1-22/+0
We have the same package in Guix. * guix-science/packages/python.scm (eigen-for-python-ml-dtypes): Delete variable. Signed-off-by: Romain GARBAGE <romain.garbage@inria.fr>
2025-11-04neuroscience: python-mapca: Update to 0.0.6.Ghislain Vaillant1-10/+10
* guix-science/packages/neuroscience.scm (python-mapca): Update to 0.0.6. [source]: Switch to git. [arguments]<#:phases> Drop fix-imports, applied upstream.
2025-11-04neuroscience: python-bsmschema: Enable check.Ghislain Vaillant1-11/+19
* guix-science/packages/neuroscience.scm (python-bsmschema): Enable check. [source]: Switch to git. [home-page] Fix redirect. [synopsis]: Fix lint errors.
2025-11-04neuroscience: python-fsleyes-widgets: Update to 0.15.1.Ghislain Vaillant1-2/+2
guix-science/packages/neuroscience.scm (python-fsleyes-widgets): Update to 0.15.1.
2025-11-03neuroscience: mrtrix3: Update to 3.0.8.Ghislain Vaillant1-2/+2
* guix-science/packages/neuroscience.scm (mrtrix3): Update to 3.0.8.
2025-11-03neuroscience: fsleyes: Update to 1.16.2.Ghislain Vaillant1-2/+2
* guix-science/packages/neuroscience.scm (fsleyes): Update to 1.16.2.
2025-11-03neuroscience: python-nitransforms: Update to 25.1.0.Ghislain Vaillant1-11/+51
* guix-science/packages/neuroscience.scm (python-nitransforms): Update to 25.1.0. [source]: Switch to git. [arguments]: Enable check.
2025-11-03neuroscience: python-sdcflows: Update to 2.15.0.Ghislain Vaillant1-7/+45
* guix-science/packages/neuroscience.scm (python-sdcflows): Update to 2.15.0. [source]: Switch to git. [arguments]: Enable check.
generated by cgit v1.2.3 (git 2.25.1) at 2026-09-03 05:15:30 +0000