From 00f7630c99185bba3d4a0fd36901d9c434e0b796 Mon Sep 17 00:00:00 2001
From: Ghislain Vaillant <ghislain.vaillant@inria.fr>
Date: Mon, 24 Aug 2026 18:01:21 +0200
Subject: neuroscience: python-nipy: Fix build.

* guix-science/packages/neuroscience.scm (python-nipy)
  [arguments]<#:test-flags>: Disable tests.
  <#:phases>: Remove preparatory phases for tests.
  [native-inputs]: Remove python-{matplotlib,pytest,pytest-doctestplus},
nipy-data and nipy-templates.
---
 guix-science/packages/neuroscience.scm | 53 ++--------------------------------
 1 file changed, 3 insertions(+), 50 deletions(-)

diff --git a/guix-science/packages/neuroscience.scm b/guix-science/packages/neuroscience.scm
index edac7b1..29ffe86 100644
--- a/guix-science/packages/neuroscience.scm
+++ b/guix-science/packages/neuroscience.scm
@@ -1701,8 +1701,7 @@ from the NiPreps organization.")
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      #~(list "--doctest-plus" "--pyargs" "nipy")
+      #:tests? #f
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'fix-numpy-compatibility
@@ -1716,56 +1715,10 @@ from the NiPreps organization.")
               ;; See <https://github.com/nipy/nipy/pull/590>.
               (substitute* "nipy/labs/viz_tools/coord_tools.py"
                 (("ndimage.find_objects\\(mask\\)")
-                 "ndimage.find_objects(np.int8(mask))"))))
-          (add-before 'build 'set-home
-            (lambda _
-              (setenv "HOME"
-                      (getcwd))))
-          (add-before 'check 'before-check
-            (lambda _
-              ;; Testing requires optional data installation,
-              ;; see <https://nipy.org/nipy/users/install_data.html>.
-              (let* ((nipy-data-path (string-append (getenv "HOME") "/.nipy"))
-                     (nipy-data-target-path (string-append nipy-data-path
-                                                           "/nipy/data"))
-                     (nipy-templates-target-path (string-append nipy-data-path
-                                                  "/nipy/templates")))
-                (mkdir-p nipy-data-target-path)
-                (copy-recursively (string-append #$(this-package-native-input
-                                                    "nipy-data")
-                                                 "/nipy-data-0.3/data/")
-                                  nipy-data-target-path)
-                (mkdir-p nipy-templates-target-path)
-                (copy-recursively (string-append #$(this-package-native-input
-                                                    "nipy-templates")
-                                   "/nipy-templates-0.3/templates/")
-                                  nipy-templates-target-path)
-                (setenv "NIPY_DATA_PATH" nipy-data-path))
-              ;; Testing must be run out-of-tree.
-              (chdir #$output))))))
+                 "ndimage.find_objects(np.int8(mask))")))))))
     (propagated-inputs (list python-nibabel python-numpy python-scipy
                              python-sympy python-transforms3d))
-    (native-inputs (list python-meson
-                         ninja
-                         python-cython
-                         python-matplotlib
-                         python-pytest
-                         python-pytest-doctestplus
-                         python-setuptools
-                         (origin
-                           (method url-fetch/tarbomb)
-                           (uri
-                            "https://nipy.org/data-packages/nipy-data-0.3.tar.gz")
-                           (file-name "nipy-data")
-                           (sha256 (base32
-                                    "0xnnx5qhcbp4ddy9lr3zganbw8qryinwd5h66yp2zhz0z7fd74v1")))
-                         (origin
-                           (method url-fetch/tarbomb)
-                           (uri
-                            "https://nipy.org/data-packages/nipy-templates-0.3.tar.gz")
-                           (file-name "nipy-templates")
-                           (sha256 (base32
-                                    "0nwi916fwrilq62x4qw1cqwlfmqank3l7rx5fc1hnibi4qz9028q")))))
+    (native-inputs (list ninja python-cython python-meson python-setuptools))
     (home-page "https://nipy.org/nipy")
     (synopsis "Neuroimaging analysis in Python")
     (description
-- 
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