From 4cba72c31076d05073a7a0cd3a08712f1d5e939e Mon Sep 17 00:00:00 2001
From: Ghislain Vaillant <ghislain.vaillant@inria.fr>
Date: Fri, 21 Aug 2026 12:43:01 +0200
Subject: physics: python-fabio: Update to 2026.06.

* guix-science/packages/physics.scm (python-fabio)
  [source]: Update to 2026.06.
  [arguments]<#:phases>: Patch the test suite to avoid importing all optional
dependencies. Run 'check phase after 'add-install-to-pythonpath.
  [propagated-inputs]: Add python-filelock. Remove python-{glymur,matplotlib,
pillow,pyside-6}.
  [native-inputs]: Move python-numexpr from propagated-inputs.
---
 guix-science/packages/physics.scm | 27 ++++++++++++++++-----------
 1 file changed, 16 insertions(+), 11 deletions(-)

diff --git a/guix-science/packages/physics.scm b/guix-science/packages/physics.scm
index 42d1b2a..860d7c8 100644
--- a/guix-science/packages/physics.scm
+++ b/guix-science/packages/physics.scm
@@ -929,7 +929,7 @@ codes.")
 (define-public python-fabio
   (package
     (name "python-fabio")
-    (version "2025.10.0")
+    (version "2026.06")
     (source
      (origin
        (method git-fetch)
@@ -938,28 +938,33 @@ codes.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "16f8dfg01j3m7l3npghmslhd44glrj2wk3frwhc1avqxpp4n0a6m"))))
+        (base32 "0ymgv7vz030id88x140f7mmv17my40jb0zzz1ad5d72vvfch9xax"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'skip-test-import-all
+            (lambda _
+              (substitute* (list "src/fabio/test/meson.build"
+                                 "src/fabio/test/test_all.py")
+                ((".*test_import.*")
+                 ""))))
+
+          ;; Requires install first.
           (delete 'check)
-          (add-after 'install 'check
-            (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+
+          (add-after 'add-install-to-pythonpath 'check
+            (lambda* (#:key tests? #:allow-other-keys)
               (when tests?
-                (add-installed-pythonpath inputs outputs)
                 (invoke "python3" "run_tests.py" "--installed")))))))
-    (propagated-inputs (list python-glymur
+    (propagated-inputs (list python-filelock
                              python-h5py
                              python-hdf5plugin
                              python-lxml
-                             python-matplotlib
-                             python-numexpr
                              python-numpy
-                             python-pillow
-                             python-pyside-6))
-    (native-inputs (list python-meson ninja python-cython
+                             python-pillow))
+    (native-inputs (list ninja python-cython python-meson python-numexpr
                          python-pyproject-metadata))
     (home-page "https://www.silx.org/doc/fabio/latest")
     (synopsis "I/O library for images produced by 2D X-ray detectors")
-- 
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