From fa619dde7d577ddd1d3e05ce73b1b42f2d891e0b Mon Sep 17 00:00:00 2001 From: Ghislain Vaillant Date: Sat, 29 Aug 2026 10:22:06 +0200 Subject: electrophysiology: python-nwbinspector: Update to 0.7.2. * guix-science/packages/electrophysiology.scm (python-nwbinspector) [source]: Update to 0.7.2. [arguments]<#:test-flags>: Ignore faulty tests. [propagated-inputs]: Remove python-hdmf-zarr. --- guix-science/packages/electrophysiology.scm | 20 +++++++++++++++++--- 1 file changed, 17 insertions(+), 3 deletions(-) diff --git a/guix-science/packages/electrophysiology.scm b/guix-science/packages/electrophysiology.scm index b1228b7..e27fdf2 100644 --- a/guix-science/packages/electrophysiology.scm +++ b/guix-science/packages/electrophysiology.scm @@ -2497,7 +2497,7 @@ as well as associated behavioral events. (define-public python-nwbinspector (package (name "python-nwbinspector") - (version "0.6.5") + (version "0.7.2") (source (origin (method git-fetch) @@ -2506,10 +2506,25 @@ as well as associated behavioral events. (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1g0i863xyzvd13sk2mh6md2gwjjknyq5vlqk0pfjkjirj7lhfc06")))) + (base32 "0fs23jnycg6mnn4afvdwwizyv1ka3p1mm7il4jx60x6dmmwq69rm")))) (build-system pyproject-build-system) (arguments (list + #:test-flags + #~(list + ;; raises "ValueError: ImageSeries 'TestImageSeries': num_samples + ;; should be set when format='external' [...]" + (string-append "--deselect=tests/unit_tests/test_image_series.py" + "::test_check_image_series_starting_frame_without_external_file_pass_with_external") + ;; raises "IndexError: DynamicTableRegion values [...] are out of bounds" + (string-join (list "--deselect=tests/unit_tests/test_tables.py" + "TestCheckDynamicTableRegion" + "test_check_dynamic_table_region_data_validity_gt_len") + "::") + (string-join (list "--deselect=tests/unit_tests/test_tables.py" + "TestCheckDynamicTableRegion" + "test_check_dynamic_table_region_data_validity_lt_zero") + "::")) #:phases #~(modify-phases %standard-phases (add-before 'build 'set-home @@ -2519,7 +2534,6 @@ as well as associated behavioral events. (propagated-inputs (list python-aiohttp python-click python-fsspec - python-hdmf-zarr python-isodate python-jsonschema python-natsort -- cgit v1.2.3