* gnu/packages/backup.scm (hdup): Delete variable.

* gnu/packages/backup.scm (partclone): New variable.

* gnu/packages/backup.scm (wimlib): Update to 1.14.5.

* gnu/packages/backup.scm (libarchive-next): Update to 3.8.7.

We are now building with go-1.25 by default.

Automated via:

  git grep -rl '#:go go-1.25' | xargs sed -i '/.*#:go go-1.25.*/d'.

Change-Id: I5a503a6db10fc65cb22abd89563dfb6297db6ac6

* gnu/packages/backup.scm (borgmatic): Update to 2.1.5.
[phases]{set-path}: Remove phase.
[native-inputs]: Remove python-wheel; add python-pytest-timeout.

Change-Id: Ia6aa2d2447db4f2fff6441c52298234396d7c057

* gnu/packages/backup.scm (borg): Update to 1.4.4.
[source]: Switch to git-fetch.
<snippet>: Remove it as Git source does not provide generated C files.
[arguments] <test-flags>: Limit parallel tests up to 8 threads for
stability in CI; skip 7 more tests.
[phases]{install-doc}: Remove phase.
{fix-testsuite-setuid-mode, build-and-install-docs}: New phases.
{install-shell-completions}: Introduce bash, zsh and fish variable in
'let*'.
[inputs]: Remove python-msgpack-for-borg; add python-msgpack and
python-packaging.
[native-inputs]: Remove python-dateutil and python-wheel; add
python-guzzle-sphinx-theme, python-pkgconfig, python-sphinx, and
python-sphinxcontrib-jquery.

* gnu/packages/python-xyz.scm (python-msgpack-for-borg): Delete variable.

Change-Id: Ib681a7cac63b50e7c276e7b765fb273ad2ddebf9

This commit was generated using https://codeberg.org/guix/guix/pulls/5862:

   guix style -S remove-native-inputs --parameter=python-pytest-runner

and adding back python-pytest if necessary.

* gnu/packages/geo.scm (python-pyshp)
* gnu/packages/backup.scm (vorta)
[native-inptus]: Remove python-pytest-runner, add python-pytest.

* gnu/packages/backup.scm (duplicity)
* gnu/packages/linux.scm (python-spython)
* gnu/packages/bioinformatics.scm (python-cwl-utils)
* gnu/packages/databases.scm (python-pyarrow, datasette)
* gnu/packages/fontutils.scm (python-cu2qu)
* gnu/packages/gnome.scm (terminator)
* gnu/packages/music.scm (stargate)
* gnu/packages/python-science.scm (python-upsetplot)
* gnu/packages/python-web.scm (python-falcon, python-cssselect2)
* gnu/packages/python-xyz.scm (python-docrep, python-cairocffi,
  python-entrypoint2)
* gnu/packages/task-management.scm (todoman)
* gnu/packages/video.scm (yle-dl)
* gnu/packages/vpn.scm (sshuttle)
[native-inptus]: Remove python-pytest-runner.

Relates-to: https://codeberg.org/guix/guix/issues/7474
Change-Id: Ia79595309ba8965c4374e7c24a1ef4c3e36fe1ea
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

After this commit, when both modules are imported:

- if pyproject is imported before, the warning is 'pypi-uri' is
deprecated, use '(@ (guix build-system pyproject) pypi-uri)' instead

- if python is imported before, the warning is `pypi-uri' imported from
both (guix build-system python) and (guix build-system pyproject)

This seems convenient enough to warn for deprecation in the short term,
while avoiding any breaking changes.

* guix/build-system/pyproject.scm (pypi-uri): Move the procedure from
(guix build-system python) here.

* guix/build-system/python (pypi-uri): Drop definition, import it
from (guix build-system pyproject) and deprecate it.

* gnu/packages/openldap.scm: Reorder modules to get the right warning.

* gnu/packages/pypy.scm: Likewise.

* gnu/packages/*.scm : Drop module (guix build-system python).

* tests/import/pypi.scm: Likewise.

Merges: https://codeberg.org/guix/guix/pulls/7448
Change-Id: Ib42f53bc545052eb7918a25afe9db6d5fc2cb834
Reviewed-by: Nguyễn Gia Phong <cnx@loang.net>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

* gnu/packages/astronomy.scm (python-wiimatch)
* gnu/packages/audio.scm (python-resampy, python-librosa)
* gnu/packages/backup.scm (borgmatic)
* gnu/packages/bioinformatics.scm (python-bed-reader, python-pysnptool)
(python-pairtools):
* gnu/packages/check.scm (python-pytest-nunit, python-pytest-perf)
* gnu/packages/dav.scm (vdirsyncer, radicale)
* gnu/packages/django.scm (python-django-redis)
* gnu/packages/engineering.scm (python-scikit-rf)
* gnu/packages/fediverse.scm (python-mastodon-py)
* gnu/packages/fontutils.scm (psautohint)
* gnu/packages/geo.scm (python-pyogrio)
* gnu/packages/graphviz.scm (python-uqbar)
* gnu/packages/jupyter.scm (python-jupyterlab-server python-nbclient,
python-jupyterlite-core, python-ipydatawidgets)
* gnu/packages/machine-learning.scm
(python-pymanopt, python-tensorly, python-torchmetrics)
* gnu/packages/maths.scm (python-libensemble)
* gnu/packages/music.scm (stargate)
* gnu/packages/python-check.scm (python-atpublic, python-vcrpy)
* gnu/packages/python-compression.scm (python-zipstream-ng)
* gnu/packages/python-science.scm (python-plotnine,
python-pandaparallel, python-pyts, python-pingouin)
* gnu/packages/python-web.scm (python-devpi-process, python-cheroot,
python-jsonpickle, python-flask-babel, python-url-normalize,
python-elasticsearch, python-hupper, python-simple-websocket,
python-apiron, python-huggingface-hub, python-aiosignal, python-ovh,
python-cbor2, python-zeep, hypercorn, python-warcio, python-aioftp,
python-oauthlib, python-tinycss2, python-cssselect2, python-httpcore,
python-wsgiprox, python-venusian, gunicorn)
* gnu/packages/python-xyz.scm (python-janus, python-affine,
python-contourpy, python-echo, python-rasterio, python-rich-tables,
python-babel, python-pymarshal, python-portalocker, python-expandvars,
python-mizani, python-cligj, autokey,
python-robotframework-pythonlibcore, python-lsp-jsonrpc,
python-numpydoc, python-pillow, python-manimpango, python-cairocffi,
python-pubmed-parser, python-sentry-sdk, python-prettytable,
python-sniffio, python-ipywidgets, python-pyproject-api,
python-pymemcache, python-async-lru, python-numcodecs, python-mwclient,
python-cmd2, python-pyan3, python-platformdirs, python-multipart,
python-shtab, python-scooby)
* gnu/packages/rdf.scm (python-rdflib-6)
* gnu/packages/simulation.scm (python-fenics-dijitso)
* gnu/packages/sphinx.scm (python-sphinx-design)
* gnu/packages/statistics.scm (python-patsy, python-rchitect)
* gnu/packages/task-management.scm (todoman)
* gnu/packages/vpn.scm (sshuttle)
* gnu/packages/web.scm (anonip, python-tibanna)
[native-inputs]: Remove python-pytest-cov.

Change-Id: I32f027794e90333c27fdff5871180779f603846c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>