* gnu/packages/bioinformatics.scm (bio-vcf)[arguments]<#:phases>
{delete-failing-tests}: New phase.

Signed-off-by: Andreas Enge <andreas@enge.fr>

* gnu/packages/bioinformatics.scm (bowtie1): Delete variable.

* gnu/packages/bioinformatics.scm (java-htsjdk-latest): Run guix style.
[arguments]: Improve style, drop trailing #t.
[inputs]: Drop input labels.

Signed-off-by: Andreas Enge <andreas@enge.fr>

* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1)[arguments]:
Improve style, drop trailing #t.

Signed-off-by: Andreas Enge <andreas@enge.fr>

Reduce closure size from 1020.1 MiB to 196.5 MiB.

* gnu/packages/bioinformatics.scm (sambamba)[#:phases]: Add
‘remove-d-include-references’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

* gnu/packages/bioinformatics.scm (sambamba)[arguments]: Convert to list of
G-Expressions.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

* gnu/packages/bioinformatics.scm (sambamba): Reformat.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

This update fixes deprecations, but doesn't have a tag yet.

* gnu/packages/bioinformatics.scm (sambamba): Update to 1.0.1-0.dba65af.
[#:phases]<install>: Copy “sambamba-${base-version}” rather than
“sambamba-${version}”.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

The fix was not a patch, but a bump of the python-patsy package.

* gnu/packages/bioinformatics.csm (python-scikit-bio)[origin]{patches}:
Remove it.

Merges: guix/guix!10584
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

* gnu/packages/bioinformatics.scm (dropseq-tools): Run guix style.
[arguments]: Use G-expressions.
<#:phases>: Improve style of phases 'record-references and 'install,
'install-links.
[inputs]: Drop input labels.
[description]: Run guix style.

Change-Id: Icf50199a850e3f339395279cdd077c950a027065
Signed-off-by: Andreas Enge <andreas@enge.fr>