Authors were parsed from git history with the following command:

    git log --all --grep="gnu:.*oniguruma" \
    --pretty=format:";;; Copyright © %as %aN <%aE>"

* gnu/packages/textutils.scm (oniguruma): Move from here ...
* gnu/packages/regex.scm: ... to here.

* gnu/packages/admin.scm: Replace (gnu packages textutils) with (gnu
packages regex).
* gnu/packages/codex.scm: Likewise.
* gnu/packages/php.scm: Likewise.
* gnu/packages/rust-apps.scm: Likewise.
* gnu/packages/rust-sources.scm: Likewise.

* gnu/packages/machine-learning.scm: Remove (gnu packages textutils) to
resolve import warning.

* gnu/packages/web.scm: Adding (gnu packages regex) introduces import
warning, selecting just utf8proc from (gnu packages textutils) breaks
build.

* gnu/packages/textutils.scm: Add (guix deprecation).

Merges: guix/guix!9845

* gnu/packages/codex.scm (codex)[arguments]<#:cargo-test-flags>: Skip some
more racy tests.

Fixes: guix/guix#10094

* gnu/packages/codex.scm (codex)[arguments]<#:cargo-test-flags>:
Skip racy tests.

* gnu/packages/codex.scm (codex)[arguments]<#:cargo-test-flags>: Skip flaky
tests.

Follow-up to commit c8cb067001fd38b1145e48413e43fa99cbf93347.

* gnu/packages/codex.scm (codex)[source]: Remove nonexistent patch.

* gnu/packages/codex.scm (codex): Update to 0.144.1.
* gnu/packages/rust-sources.scm (rust-codex-0.142.0): Delete variable.
* gnu/packages/rust-crates.scm: Update accordingly.
* gnu/packages/patches/codex-0.144.1-disable-code-mode.patch: New file.
* gnu/packages/patches/codex-0.144.1-test-selected-capability-readiness.patch: New file.
* gnu/packages/patches/codex-0.144.1-test-disable-network-model-refresh.patch: New file.
* gnu/packages/patches/rust-codex-0.120.0-remove-libwebrtc.patch: Rename to...
* gnu/packages/patches/codex-0.144.1-remove-libwebrtc.patch: ...this.
* gnu/packages/patches/rust-codex-0.124.0-remove-patch-sections.patch: Rename to...
* gnu/packages/patches/codex-0.144.1-remove-patch-sections.patch: ...this.
* gnu/packages/patches/rust-codex-0.98.0-test-shebangs.patch: Rename to...
* gnu/packages/patches/codex-0.144.1-test-shebangs.patch: ...this.
* gnu/packages/patches/rust-codex-0.120.0-test-timeout.patch: Rename to...
* gnu/packages/patches/codex-0.144.1-test-timeout.patch: ...this.
* gnu/packages/patches/rust-codex-0.124.0-code-mode-stub-toolname.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Update references.

* gnu/packages/llvm.scm (libomp, llvm, clang-runtime, clang, clang-toolchain):
Switch to llvm-22 version.
(ocaml-llvm): Use llvm-13.
(wllvm)[native-inputs]: Remove clang; add clang-13.
(emacs-clang-format)[arguments]: Use #:lisp-directory, Adjust configure
phase. Add #:test-command.
* gnu/packages/bioinformatics.scm (alignoth)[native-inputs]: Remove clang; add
clang-13.
(lammps)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/bootloaders.scm (make-grub)[inputs]: Remove clang; add
clang-13.
* gnu/packages/c.scm (libdispatch)[native-inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/check.scm (pedansee)[native-inputs]: Remove clang; add
clang-13.
(python-lit)[native-inputs]: Remove llvm; add llvm-13.
* gnu/packages/codex.scm (codex, codex-acp)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/compression.scm (cmix)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/cpp.scm (ccls)[native-inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/darwin.scm (cctools)[inputs]: Remove clang-toolchain; add
clang-toolchain-13.
[native-inputs]: Remove clang-toolchain; add clang-toolchain-13.
* gnu/packages/debug.scm (c-vise)[inputs]: Remove clang and llvm; add clang-13
and llvm-13.
(fandango)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Remove llvm; add
llvm-13.
* gnu/packages/electronics.scm (nvc)[inputs]: Remove llvm; add llvm-13.
(openroad)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/emacs-xyz.scm (emacs-irony-mode-server)[inputs]: Remove clang;
add clang-13.
* gnu/packages/file-systems.scm (bcachefs-tools-minimal)[native-inputs]:
Remove clang; add clang-13.
* gnu/packages/freedesktop.scm (waypipe)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/fusion.scm (fusion)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/games.scm (hedgewars)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/gnome.scm (gnome-builder)[inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/gnustep.scm (libobjc2)[inputs]: Remove clang; add clang-13.
* gnu/packages/gnuzilla.scm (mozjs)[native-inputs]: Remove llvm; add llvm-13.
* gnu/packages/graphics.scm (openshadinglanguage)[native-inputs]: Remove clang
and llvm; add clang-13 and llvm-13.
(skia)[native-inputs]: Remove clang-toolchain; add clang-toolchain-13.
(tinygltf)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/kde-sdk.scm (kdevelop)[inputs]: Remove clang; add clang-13.
* gnu/packages/language.scm (liblouis)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/lean.scm (lean4)[inputs]: Remove llvm; add llvm-13.
* gnu/packages/lisp.scm (carp, picolisp)[inputs]: Remove clang; add clang-13.
* gnu/packages/machine-learning.scm (ctranslate2)[native-inputs]: Remove
libomp; add libomp-13.
* gnu/packages/mail.scm (stalwart)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/maths.scm (python-mathics-core)[inputs]: Remove llvm; add
llvm-13.
* gnu/packages/ocaml.scm (bap)[inputs]: Remove llvm; add llvm-13.
[native-inputs]: Remove clang; add clang-13.
[arguments]: Use this-package-input to get llvm version.
* gnu/packages/photo.scm (darktable)[inputs]: Remove libomp; add libomp-13.
[native-inputs]: Remove llvm; add llvm-13.
(ansel)[native-inputs]: Remove llvm; add llvm-13.
(photoflare)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/physics.scm (cytnx)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/qt.scm (clazy)[inputs]: Remove clang and llvm; add clang-13 and
llvm-13.
* gnu/packages/rust-apps.scm (c2rust, helvum, ouch, pwmenu)
(soundcloud-tui)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/rust-sources.scm (rust-ring-0.17)[native-inputs]: Remove clang;
add clang-13.
* gnu/packages/sequoia.scm (sequoia-chameleon-gnupg)
(sequoia-sq, sequoia-sqv, sequoia-wot-tools)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/text-editors.scm (parinfer-rust, parinfer-rust-emacs)[inputs]:
Remove clang; add clang-13.
* gnu/packages/virtualization.scm (xen-guest-agent)[native-inputs]: Remove
clang; add clang-13.
* gnu/packages/wm.scm (niri)[inputs]: Remove clang; add clang-13.
* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Remove llvm; add llvm-13.
(xwayland-satellite)[inputs]: Remove clang; add clang-13.

Change-Id: Ifb8f13908a9e7112466b2e966200670ddcc2f162

* gnu/packages/codex.scm (codex)[properties]: Add max-silent-time.

Change-Id: Id20367c2702cf9d0c12fc6b363d7f33c178324f5

* gnu/packages/codex.scm (codex)[properties]: Add timeout.

Change-Id: I60498654dc0a6553d78021164f0b132a9ef2da22

* gnu/packages/patches/rust-codex-0.124.0-code-mode-stub-toolname.patch: New file.
* gnu/packages/patches/rust-codex-0.124.0-remove-patch-sections.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add references to them.
* gnu/packages/codex.scm (codex): Update to 0.124.0.
* gnu/packages/rust-crates.scm: Update.
* gnu/packages/rust-sources.scm (rust-codex-0.124.0): New variable.

Change-Id: I90570206d39c533edfc6d70e229ee3f7eda9dcf2