* gnu/packages/docker.scm (python-udocker): New variable.

Relates-to: guix/guix!10625
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

Authors were parsed from git history with the following command:

    git log --all --grep="runc:" \
    --pretty=format:";;; Copyright © %as %aN <%aE> | %s"

* gnu/packages/virtualization.scm (runc): Move from here ...
* gnu/packages/containers.scm: ... to here.
* gnu/packages/docker.scm: Remove (gnu packages virtualization).

Relates-to: guix/guix!9640

We are now building with go-1.25 by default.

Automated via:

  git grep -rl '#:go go-1.25' | xargs sed -i '/.*#:go go-1.25.*/d'.

Change-Id: I5a503a6db10fc65cb22abd89563dfb6297db6ac6

After this commit, when both modules are imported:

- if pyproject is imported before, the warning is 'pypi-uri' is
deprecated, use '(@ (guix build-system pyproject) pypi-uri)' instead

- if python is imported before, the warning is `pypi-uri' imported from
both (guix build-system python) and (guix build-system pyproject)

This seems convenient enough to warn for deprecation in the short term,
while avoiding any breaking changes.

* guix/build-system/pyproject.scm (pypi-uri): Move the procedure from
(guix build-system python) here.

* guix/build-system/python (pypi-uri): Drop definition, import it
from (guix build-system pyproject) and deprecate it.

* gnu/packages/openldap.scm: Reorder modules to get the right warning.

* gnu/packages/pypy.scm: Likewise.

* gnu/packages/*.scm : Drop module (guix build-system python).

* tests/import/pypi.scm: Likewise.

Merges: https://codeberg.org/guix/guix/pulls/7448
Change-Id: Ib42f53bc545052eb7918a25afe9db6d5fc2cb834
Reviewed-by: Nguyễn Gia Phong <cnx@loang.net>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

* gnu/packages/docker.scm (docker-policy-helper): New variable.

Change-Id: Ic4fc6db27b1fd9784f5f13515aa6483179c1847e

* gnu/packages/docker.scm (go-github-com-moby-policy-helpers): New variable.

Change-Id: I1027f63912c7b437a19c7a421ba2cb1b572ddfb4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

Change-Id: Ifb8b60fd878b0a95ce03c59f8f96546db31261fb

This commit was made by running this command:

  sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm

… and then reverting individual hunks where the change would trigger unbound
variable warnings or other issues (such as ‘native-inputs’ is bound in the
body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined
just above).

Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab

* gnu/packages/astronomy.scm (python-asdf-compression)
(python-asdf-fits-schemas, python-cdflib, python-sunkit-spex):
* gnu/packages/bioinformatics.scm (python-whatshap, python-mudata)
(python-pyfaidx, python-ctxcore, scvelo):
* gnu/packages/bootloaders.scm (dtc):
* gnu/packages/check.scm (python-pytest-xdist, python-pytest-forked):
* gnu/packages/databases.scm (python-fastparquet):
* gnu/packages/disk.scm (greaseweazle-host-tools):
* gnu/packages/docker.scm (python-docker):
* gnu/packages/finance.scm (python-ledgerblue):
* gnu/packages/fontutils.scm (python-compreffor)
(python-defcon-bootstrap, nototools):
* gnu/packages/games.scm (sc-controller):
* gnu/packages/machine-learning.scm (python-botorch):
* gnu/packages/music.scm (python-pylast):
* gnu/packages/package-management.scm (conda):
* gnu/packages/python-build.scm (python-exceptiongroup):
* gnu/packages/python-science.scm (python-dask-image)
(python-distributed, python-osqp):
* gnu/packages/python-web.scm (python-branca, python-smart-open):
* gnu/packages/python-xyz.scm (python-conda-content-trust)
(python-menuinst, python-isort, python-pyclibrary)
(python-pyclipper, python-csb43-0.10, python-orgparse)
(python-deepmerge, python-scooby, python-uuid6):
* gnu/packages/radio.scm (nanovna-saver):
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints):
[arguments]: Remove phases setting SETUPTOOLS_SCM_PRETEND_VERSION.

* gnu/packages/python-xyz.scm (python-bagit)
[arguments]: Refactor manual 'check phase into #:test-flags.

Change-Id: I0713d6603f982a7f956d02fc3b85a384f4dd6ce4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

* gnu/packages/docker.scm (docker-compose):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

* gnu/packages/docker.scm (python-docker-5):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.