guix/gnu/packages/mpi.scm, branch wip-postfix

gnu: hwloc: Update to 2.9.2.

2023-07-11T13:52:26+00:00

* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.2.

Signed-off-by: Ludovic Courtès

gnu: Add updater input properties for R and Python packages.

2023-05-31T21:26:12+00:00

* gnu/packages/cran.scm (r-glue, r-xfun, r-vctrs)
(r-lifecycle): Turn comment about r-knitr into 'properties' field.
* gnu/packages/mpi.scm (python-mpi4py)[properties]: New field.

gnu: python-mpi4py: Update home-page.

2023-05-28T21:14:19+00:00

* gnu/packages/mpi.scm (python-mpi4py)[home-page]: Use “github.com” instead
of “bitbucket.com”.

gnu: python-mpi4py: Update to 3.1.4.

2023-05-24T13:03:59+00:00

* gnu/packages/mpi.scm (python-mpi4py): Update to 3.1.4.

gnu: openmpi: Update to 4.1.5.

2023-04-24T08:29:42+00:00

* gnu/packages/mpi.scm (openmpi): Update to 4.1.5.

gnu: Purge pre-1.3.0 deprecated packages.

2023-04-07T15:53:37+00:00

* gnu/packages/bioinformatics.scm (deeptools): Remove variable.
* gnu/packages/efi.scm (efi_analyzer): Ditto.
* gnu/packages/guile.scm (guile-2.2/bug-fix, guile-json): Ditto.
* gnu/packages/image.scm (libjpeg): Ditto.
* gnu/packages/kde.scm (kdevplatform): Ditto
* gnu/packages/linphone.scm (linphoneqt): Ditto.
* gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): Ditto.
* gnu/packages/mpi.scm (hwloc-2.0): Ditto.
* gnu/packages/music.scm (python-abjad, zlfo): Ditto.
* gnu/packages/perl.scm (perl-base, perl-parent): Ditto.
* gnu/packages/tryton.scm (python-trytond): Ditto.
* gnu/packages/video.scm (gnome-mpv): Ditto.
* tests/graph.scm: Use guile-json-1.

Signed-off-by: Ludovic Courtès

gnu: hwloc: Update to 2.9.1.

2023-04-07T15:38:42+00:00

* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.1.

Patch to skip tests requiring /sys on non-x86 systems should not be
necessary anymore, as https://github.com/open-mpi/hwloc/pull/570 has
been merged in this new version.

Signed-off-by: Ludovic Courtès

gnu: hwloc: Skip failing test on non-x86 systems.

2023-02-27T14:54:10+00:00

* gnu/packages/mpi.scm (hwloc-2)[arguments]<#:phases>: Rename
"skip-test-that-requires-/sys" phase to "skip-tests-that-require-/sys" and
expand to skip additional test requiring /sys on non-x86 systems.

Signed-off-by: Ludovic Courtès

gnu: hwloc: Remove obsolete comments.

2023-02-27T14:54:10+00:00

hwloc 2.x become the default with commit 8ec7ca22d3, "gnu: hwloc: Default to
2.x.".

* gnu/packages/mpi.scm (hwloc-1): Remove obsolete comment.
(hwloc-2): Remove obsolete comment.

Signed-off-by: Ludovic Courtès

gnu: Fix openmpi related packages.

2023-02-27T09:34:09+00:00

This makes these package definitions compatible with the openmpi package which
uses gexps as of f45fc72c282bc14da7212b4acb8fe9707e53aad0.

* gnu/packages/mpi.scm (openmpi-c++, java-openmpi,
openmpi-thread-multiple)[arguments]: Use gexps.