* gnu/packages/sequoia.scm (sequoia): Update to 2.4.1.

* gnu/packages/sequoia.scm (sequoia-wot-tools)[native-inputs]: Replace
clang-13 with clang.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[sequoia-wot-tools]:
Update entry.

* gnu/packages/sequoia.scm (sequoia-chameleon-gnupg)[native-inputs]:
Replace clang-13 with clang.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)
[sequoia-chameleon-gnupg]: Update entry.

* gnu/packages/sequoia.scm (sequoia-sqv): Update to 1.5.0.
[inputs]: Remove bzip2, openssl.
[native-inputs]: Replace clang-13 with clang.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[sequoia-sqv]:
Update entry.

* gnu/packages/sequoia.scm (sequoia-sq): Update to 1.5.0.
[native-inputs]: Replace clang-13 with clang.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[sequoia-sq]: Update
entry.

* gnu/packages/llvm.scm (libomp, llvm, clang-runtime, clang, clang-toolchain):
Switch to llvm-22 version.
(ocaml-llvm): Use llvm-13.
(wllvm)[native-inputs]: Remove clang; add clang-13.
(emacs-clang-format)[arguments]: Use #:lisp-directory, Adjust configure
phase. Add #:test-command.
* gnu/packages/bioinformatics.scm (alignoth)[native-inputs]: Remove clang; add
clang-13.
(lammps)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/bootloaders.scm (make-grub)[inputs]: Remove clang; add
clang-13.
* gnu/packages/c.scm (libdispatch)[native-inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/check.scm (pedansee)[native-inputs]: Remove clang; add
clang-13.
(python-lit)[native-inputs]: Remove llvm; add llvm-13.
* gnu/packages/codex.scm (codex, codex-acp)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/compression.scm (cmix)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/cpp.scm (ccls)[native-inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/darwin.scm (cctools)[inputs]: Remove clang-toolchain; add
clang-toolchain-13.
[native-inputs]: Remove clang-toolchain; add clang-toolchain-13.
* gnu/packages/debug.scm (c-vise)[inputs]: Remove clang and llvm; add clang-13
and llvm-13.
(fandango)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Remove llvm; add
llvm-13.
* gnu/packages/electronics.scm (nvc)[inputs]: Remove llvm; add llvm-13.
(openroad)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/emacs-xyz.scm (emacs-irony-mode-server)[inputs]: Remove clang;
add clang-13.
* gnu/packages/file-systems.scm (bcachefs-tools-minimal)[native-inputs]:
Remove clang; add clang-13.
* gnu/packages/freedesktop.scm (waypipe)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/fusion.scm (fusion)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/games.scm (hedgewars)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/gnome.scm (gnome-builder)[inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/gnustep.scm (libobjc2)[inputs]: Remove clang; add clang-13.
* gnu/packages/gnuzilla.scm (mozjs)[native-inputs]: Remove llvm; add llvm-13.
* gnu/packages/graphics.scm (openshadinglanguage)[native-inputs]: Remove clang
and llvm; add clang-13 and llvm-13.
(skia)[native-inputs]: Remove clang-toolchain; add clang-toolchain-13.
(tinygltf)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/kde-sdk.scm (kdevelop)[inputs]: Remove clang; add clang-13.
* gnu/packages/language.scm (liblouis)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/lean.scm (lean4)[inputs]: Remove llvm; add llvm-13.
* gnu/packages/lisp.scm (carp, picolisp)[inputs]: Remove clang; add clang-13.
* gnu/packages/machine-learning.scm (ctranslate2)[native-inputs]: Remove
libomp; add libomp-13.
* gnu/packages/mail.scm (stalwart)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/maths.scm (python-mathics-core)[inputs]: Remove llvm; add
llvm-13.
* gnu/packages/ocaml.scm (bap)[inputs]: Remove llvm; add llvm-13.
[native-inputs]: Remove clang; add clang-13.
[arguments]: Use this-package-input to get llvm version.
* gnu/packages/photo.scm (darktable)[inputs]: Remove libomp; add libomp-13.
[native-inputs]: Remove llvm; add llvm-13.
(ansel)[native-inputs]: Remove llvm; add llvm-13.
(photoflare)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/physics.scm (cytnx)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/qt.scm (clazy)[inputs]: Remove clang and llvm; add clang-13 and
llvm-13.
* gnu/packages/rust-apps.scm (c2rust, helvum, ouch, pwmenu)
(soundcloud-tui)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/rust-sources.scm (rust-ring-0.17)[native-inputs]: Remove clang;
add clang-13.
* gnu/packages/sequoia.scm (sequoia-chameleon-gnupg)
(sequoia-sq, sequoia-sqv, sequoia-wot-tools)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/text-editors.scm (parinfer-rust, parinfer-rust-emacs)[inputs]:
Remove clang; add clang-13.
* gnu/packages/virtualization.scm (xen-guest-agent)[native-inputs]: Remove
clang; add clang-13.
* gnu/packages/wm.scm (niri)[inputs]: Remove clang; add clang-13.
* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Remove llvm; add llvm-13.
(xwayland-satellite)[inputs]: Remove clang; add clang-13.

Change-Id: Ifb8f13908a9e7112466b2e966200670ddcc2f162

* gnu/packages/sequoia.scm (sequoia-sqv): Update to 1.4.0.
[inputs]: Add bzip2.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[sequoia-sqv]:
Update entry.

* gnu/packages/sequoia.scm (sequoia-wot-tools): Update to 0.15.2.
[source]: Update source URI.
[arguments]: Remove cargo-test-flags. Update bash shell completion
directory.
[native-inputs]: Add gnupg.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)
[sequoia-wot-tools]: Update entry.

Change-Id: If2b32e42e4e2a58017e69bd6d05fc9c680583cb2

Addresses rust security advisories, including CVE-2026-42783,
CVE-2026-42784.

* gnu/packages/sequoia.scm (sequoia): Update to 2.3.0.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)
[sequoia-chameleon-gnupg, sequoia-sq, sequioa-sqv, sequoia-wot-tools]:
Update entries.

Change-Id: Ic53219aae620e7405a43f5d17cecdebf35179b62

Addresses rust security advisories.

* gnu/packages/sequoia.scm (sequoia-chameleon-gnupg)[native-inputs]: Add
capnproto.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Update entry for
sequoia-chameleon-gnupg.

Change-Id: Ica3d71e8e2313f15f9045f74a99892d2dda50cfe