diff options
| author | Andreas Enge <andreas@enge.fr> | 2025-11-18 17:52:28 +0100 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-11-18 17:52:31 +0100 |
| commit | 1d739bcc1594de90458e88e890faa22bd57c00c2 (patch) | |
| tree | 2c8d82cc1cca71f29323bf30d205e5991e6a026e | |
| parent | 7564f8620a6a904ea9473e2855cbef4d312ff8c4 (diff) | |
gnu: Remove vbz-compression.
* gnu/packages/bioinformatics.scm (vbz-compression): Delete variable.
Fixes: guix/guix#3640
Change-Id: I996c211af44a7342cb83249c0a9347f11d324069
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 0 insertions, 37 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5c137889ee0..a1f791ddfb7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm | |||
| @@ -22207,43 +22207,6 @@ datasets to ascertain that it achieves high sensitivity and specificity in | |||
| 22207 | multiple experimental contexts.") | 22207 | multiple experimental contexts.") |
| 22208 | (license license:expat))) | 22208 | (license license:expat))) |
| 22209 | 22209 | ||
| 22210 | (define-public vbz-compression | ||
| 22211 | (package | ||
| 22212 | (name "vbz-compression") | ||
| 22213 | (version "1.0.13") | ||
| 22214 | (source | ||
| 22215 | (origin | ||
| 22216 | (method git-fetch) | ||
| 22217 | (uri (git-reference | ||
| 22218 | (url "https://github.com/nanoporetech/vbz_compression/") | ||
| 22219 | (commit version) | ||
| 22220 | ;; We include the streamvbyte sources | ||
| 22221 | (recursive? #true))) | ||
| 22222 | (file-name (git-file-name name version)) | ||
| 22223 | (sha256 | ||
| 22224 | (base32 | ||
| 22225 | "1jf5i5v0h58s7w6rhgi4w1vvxnk9jzbgmiic14d48ngr204m0w5c")))) | ||
| 22226 | (build-system cmake-build-system) | ||
| 22227 | (arguments | ||
| 22228 | `(#:configure-flags | ||
| 22229 | '("-DENABLE_CONAN=OFF" | ||
| 22230 | ;; Python things aren't even installed, so we might as well | ||
| 22231 | ;; disable building them. | ||
| 22232 | "-DENABLE_PYTHON=OFF"))) | ||
| 22233 | (inputs | ||
| 22234 | (list ;("hdf5" ,hdf5-1.10) | ||
| 22235 | `(,zstd "lib"))) | ||
| 22236 | (native-inputs | ||
| 22237 | (list googlebenchmark)) | ||
| 22238 | (home-page "https://github.com/nanoporetech/vbz_compression/") | ||
| 22239 | (synopsis "VBZ compression plugin for nanopore signal data") | ||
| 22240 | (description | ||
| 22241 | "VBZ Compression uses variable byte integer encoding to compress | ||
| 22242 | nanopore signal data. The performance of VBZ is achieved by taking | ||
| 22243 | advantage of the properties of the raw signal and therefore is most | ||
| 22244 | effective when applied to the signal dataset.") | ||
| 22245 | (license license:mpl2.0))) | ||
| 22246 | |||
| 22247 | (define-public tbsp | 22210 | (define-public tbsp |
| 22248 | (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41") | 22211 | (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41") |
| 22249 | (revision "2")) | 22212 | (revision "2")) |
