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authorAndreas Enge <andreas@enge.fr>2025-11-18 17:52:28 +0100
committerAndreas Enge <andreas@enge.fr>2025-11-18 17:52:31 +0100
commit1d739bcc1594de90458e88e890faa22bd57c00c2 (patch)
tree2c8d82cc1cca71f29323bf30d205e5991e6a026e
parent7564f8620a6a904ea9473e2855cbef4d312ff8c4 (diff)
gnu: Remove vbz-compression.
* gnu/packages/bioinformatics.scm (vbz-compression): Delete variable. Fixes: guix/guix#3640 Change-Id: I996c211af44a7342cb83249c0a9347f11d324069
-rw-r--r--gnu/packages/bioinformatics.scm37
1 files changed, 0 insertions, 37 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c137889ee0..a1f791ddfb7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22207,43 +22207,6 @@ datasets to ascertain that it achieves high sensitivity and specificity in
22207multiple experimental contexts.") 22207multiple experimental contexts.")
22208 (license license:expat))) 22208 (license license:expat)))
22209 22209
22210(define-public vbz-compression
22211 (package
22212 (name "vbz-compression")
22213 (version "1.0.13")
22214 (source
22215 (origin
22216 (method git-fetch)
22217 (uri (git-reference
22218 (url "https://github.com/nanoporetech/vbz_compression/")
22219 (commit version)
22220 ;; We include the streamvbyte sources
22221 (recursive? #true)))
22222 (file-name (git-file-name name version))
22223 (sha256
22224 (base32
22225 "1jf5i5v0h58s7w6rhgi4w1vvxnk9jzbgmiic14d48ngr204m0w5c"))))
22226 (build-system cmake-build-system)
22227 (arguments
22228 `(#:configure-flags
22229 '("-DENABLE_CONAN=OFF"
22230 ;; Python things aren't even installed, so we might as well
22231 ;; disable building them.
22232 "-DENABLE_PYTHON=OFF")))
22233 (inputs
22234 (list ;("hdf5" ,hdf5-1.10)
22235 `(,zstd "lib")))
22236 (native-inputs
22237 (list googlebenchmark))
22238 (home-page "https://github.com/nanoporetech/vbz_compression/")
22239 (synopsis "VBZ compression plugin for nanopore signal data")
22240 (description
22241 "VBZ Compression uses variable byte integer encoding to compress
22242nanopore signal data. The performance of VBZ is achieved by taking
22243advantage of the properties of the raw signal and therefore is most
22244effective when applied to the signal dataset.")
22245 (license license:mpl2.0)))
22246
22247(define-public tbsp 22210(define-public tbsp
22248 (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41") 22211 (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
22249 (revision "2")) 22212 (revision "2"))