gnu: python-verde: Update to 1.9.0.

* gnu/packages/geo.scm (python-verde): Update to 1.9.0.
[source]: Switch to git-fetch.
[arguments]{test-flags}: Ignore some tests due to a regression because
of the scikit-learn update.
[native-inputs]: Add python-setuptools-scm.

Relates-to: guix/guix!10413
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

1 files changed, 15 insertions, 6 deletions

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index ff7ac785958..13d46a4bd28 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -1882,16 +1882,19 @@ utilities for data translation and processing.")
 (define-public python-verde
   (package
     (name "python-verde")
-    (version "1.8.1")
+    (version "1.9.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "verde" version))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/fatiando/verde")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1hsya3nlv8fycjglnl9dv29nqnz9rhw2f8q9mp3bp95ixk75ayp9"))))
+        (base32 "1pxlhajhq29qybx8l1jv9dab7164y0k0grz95k6s8pcd3aii7sa6"))))
     (build-system pyproject-build-system)
     (arguments
-     ;; tests: 171 passed, 7 deselected, 470 warnings
+     ;; tests: 164 passed, 10 deselected, 48 warnings
      (list
       #:test-flags
       ;; AssertionError: Regex pattern did not match.  Input: "Window size '5'
@@ -1899,6 +1902,11 @@ utilities for data translation and processing.")
       ;; np.float64(-1.0), np.float64(6.0), np.float64(20.0))'."
       #~(list (string-append "--deselect=verde/tests/test_coordinates.py"
                              "::test_rolling_window_oversized_window")
+              ;; Undamped Spline/SplineCV fits return wrong predictions
+              ;; with scikit-learn >= 1.9. Regression reported upstream:
+              ;; https://github.com/fatiando/verde/issues/558
+              "--deselect=verde/tests/test_chain.py::test_chain_double"
+              "--ignore=verde/tests/test_spline.py"
               ;; Tests below fetch data remotely.
               "-k" (string-append "not test_minimal_integration_2d_gps"
                                   " and not test_datasets_locate"
@@ -1912,7 +1920,8 @@ utilities for data translation and processing.")
            python-matplotlib
            python-pytest
            python-pytest-mpl
-           python-setuptools))
+           python-setuptools
+           python-setuptools-scm))
     (propagated-inputs
      (list python-dask
            python-numpy