gnu: stpipeline: Update to 2.1.0.

* gnu/packages/bioinformatics.scm (stpipeline): Update to 2.1.0.
[arguments]{test-flags}: Add failing test.
[native-inputs]: Re-indent.

Signed-off-by: Andreas Enge <andreas@enge.fr>

1 files changed, 8 insertions, 6 deletions

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4716f76ae04..6365d9a003e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11646,7 +11646,7 @@ for Spatial Transcriptomics data.")
 (define-public stpipeline
   (package
     (name "stpipeline")
-    (version "2.0.0")
+    (version "2.1.0")
     (source
      (origin
        (method git-fetch)
@@ -11655,10 +11655,13 @@ for Spatial Transcriptomics data.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1qah9sa7wy9ywf0si2ngqg0qyr9jjp5gxmjx3y65i78bxyq8pfyx"))))
+        (base32 "03j3426ihhb6k6crpdb0cfvygc4bxqn20iq7bvidgcigbq0as7sd"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      ;; This test fails with pandas@3, try to disable it on the next update.
+      #~(list "--deselect=tests/integration_test.py::test_multi_qa")
       #:phases '(modify-phases %standard-phases
                   ;; requirements.txt and pyproject.toml have all versions
                   ;; of the dependencies hardcoded. All tests pass, so it should
@@ -11680,10 +11683,9 @@ for Spatial Transcriptomics data.")
                              python-types-regex
                              samtools
                              star))
-    (native-inputs (list
-                    python-cython
-                    python-pytest
-                    python-poetry-core))
+    (native-inputs (list python-cython
+                         python-pytest
+                         python-poetry-core))
     (home-page "https://github.com/jfnavarro/st_pipeline")
     (synopsis "Pipeline for spatial mapping of unique transcripts")
     (description