summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorLudovic Courtès <ludo@gnu.org>2026-03-11 23:12:16 +0100
committerLudovic Courtès <ludo@gnu.org>2026-03-20 13:27:16 +0100
commit1ae20f03f43a2af2bcde3751a2809fe152298d34 (patch)
treebe11f116044ab4cbc7994e2cf88ded0e21db4bbc /gnu/packages/bioinformatics.scm
parent4ba653e637940b147ea5cdcf45397b8ac7f3d014 (diff)
gnu: Reference the inherited inputs values.
This commit was made by running this command: sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm … and then reverting individual hunks where the change would trigger unbound variable warnings or other issues (such as ‘native-inputs’ is bound in the body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined just above). Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm4
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a0b2f6db624..5b2d5194ff3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2129,7 +2129,7 @@ Format (GFF) with Biopython integration.")
2129 (sha256 2129 (sha256
2130 (base32 "131hiir94jkm9jj2wfpybwndgzn8k0zc1ji1qjn5cz7w48x3ri13")))) 2130 (base32 "131hiir94jkm9jj2wfpybwndgzn8k0zc1ji1qjn5cz7w48x3ri13"))))
2131 (propagated-inputs 2131 (propagated-inputs
2132 (modify-inputs (package-propagated-inputs python-bcbio-gff) 2132 (modify-inputs propagated-inputs
2133 (replace "python-biopython" python-biopython-1.73)))))) 2133 (replace "python-biopython" python-biopython-1.73))))))
2134 2134
2135(define bed-sample-files 2135(define bed-sample-files
@@ -6703,7 +6703,7 @@ meso, or continuum scale.")
6703 "-D MLIAP_ENABLE_PYTHON=yes" 6703 "-D MLIAP_ENABLE_PYTHON=yes"
6704 (string-append "-DN2P2_DIR=" #$(this-package-input "n2p2")))))) 6704 (string-append "-DN2P2_DIR=" #$(this-package-input "n2p2"))))))
6705 (inputs 6705 (inputs
6706 (modify-inputs (package-inputs lammps) 6706 (modify-inputs inputs
6707 (delete "pnetcdf") 6707 (delete "pnetcdf")
6708 (replace "hdf5-parallel-openmpi" hdf5) 6708 (replace "hdf5-parallel-openmpi" hdf5)
6709 (delete "openmpi"))))) 6709 (delete "openmpi")))))