diff options
| author | Efraim Flashner <efraim@flashner.co.il> | 2026-03-23 11:36:33 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2026-03-23 13:58:44 +0200 |
| commit | c7d24e6fbe00286b6862c4de65a9276344e44dc6 (patch) | |
| tree | 826549998634cf4c2c0b01b077797aa47fedb631 /gnu/packages/bioinformatics.scm | |
| parent | 0bdb5c58ccf892c5ad384ddff7bed3aedd0f2940 (diff) | |
gnu: skewer: Relabel as version 0.2.2.
This is the tag for the given commit.
* gnu/packages/bioinformatics.scm (skewer)[version]: Set to 0.2.2.
Change-Id: I7f24b0320b5e20ba36e56c0a0708ea64ec7ba86a
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 60 |
1 files changed, 29 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5761ce0080a..544de8bac84 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm | |||
| @@ -16377,40 +16377,38 @@ browser.") | |||
| 16377 | "The contents of this package are free for all uses.")))) | 16377 | "The contents of this package are free for all uses.")))) |
| 16378 | 16378 | ||
| 16379 | (define-public skewer | 16379 | (define-public skewer |
| 16380 | (let ((commit "978e8e46cba44595ece623e5387749284a86b74b") | 16380 | (package |
| 16381 | (revision "1")) | 16381 | (name "skewer") |
| 16382 | (package | 16382 | (version "0.2.2") |
| 16383 | (name "skewer") | 16383 | (source |
| 16384 | (version (git-version "0" revision commit)) | 16384 | (origin |
| 16385 | (source | 16385 | (method git-fetch) |
| 16386 | (origin | 16386 | (uri (git-reference |
| 16387 | (method git-fetch) | 16387 | (url "https://github.com/relipmoc/skewer") |
| 16388 | (uri (git-reference | 16388 | (commit version))) |
| 16389 | (url "https://github.com/relipmoc/skewer") | 16389 | (file-name (git-file-name name version)) |
| 16390 | (commit commit))) | 16390 | (sha256 |
| 16391 | (file-name (git-file-name name version)) | 16391 | (base32 |
| 16392 | (sha256 | 16392 | "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69")))) |
| 16393 | (base32 | 16393 | (build-system gnu-build-system) |
| 16394 | "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69")))) | 16394 | (arguments |
| 16395 | (build-system gnu-build-system) | 16395 | (list |
| 16396 | (arguments | 16396 | #:tests? #f |
| 16397 | (list | 16397 | #:make-flags |
| 16398 | #:tests? #f | 16398 | #~(list "CXXFLAGS=-std=c++11 -c -O2") |
| 16399 | #:make-flags | 16399 | #:phases |
| 16400 | #~(list "CXXFLAGS=-std=c++11 -c -O2") | 16400 | #~(modify-phases %standard-phases |
| 16401 | #:phases | 16401 | (delete 'configure) |
| 16402 | #~(modify-phases %standard-phases | 16402 | (replace 'install |
| 16403 | (delete 'configure) | 16403 | (lambda _ |
| 16404 | (replace 'install | 16404 | (install-file "skewer" (string-append #$output "/bin"))))))) |
| 16405 | (lambda _ | 16405 | (home-page "https://github.com/relipmoc/skewer") |
| 16406 | (install-file "skewer" (string-append #$output "/bin"))))))) | 16406 | (synopsis "Bit-masked k-difference matching") |
| 16407 | (home-page "https://github.com/relipmoc/skewer") | 16407 | (description "Skewer implements the bit-masked k-difference matching |
| 16408 | (synopsis "Bit-masked k-difference matching") | ||
| 16409 | (description "Skewer implements the bit-masked k-difference matching | ||
| 16410 | algorithm dedicated to the task of adapter trimming and it is specially | 16408 | algorithm dedicated to the task of adapter trimming and it is specially |
| 16411 | designed for processing next-generation sequencing (NGS) paired-end | 16409 | designed for processing next-generation sequencing (NGS) paired-end |
| 16412 | sequences.") | 16410 | sequences.") |
| 16413 | (license license:expat)))) | 16411 | (license license:expat))) |
| 16414 | 16412 | ||
| 16415 | (define-public f-seq | 16413 | (define-public f-seq |
| 16416 | (let ((commit "6ccded34cff38cf432deed8503648b4a66953f9b") | 16414 | (let ((commit "6ccded34cff38cf432deed8503648b4a66953f9b") |
