summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorEfraim Flashner <efraim@flashner.co.il>2026-03-23 11:36:33 +0200
committerEfraim Flashner <efraim@flashner.co.il>2026-03-23 13:58:44 +0200
commitc7d24e6fbe00286b6862c4de65a9276344e44dc6 (patch)
tree826549998634cf4c2c0b01b077797aa47fedb631 /gnu/packages/bioinformatics.scm
parent0bdb5c58ccf892c5ad384ddff7bed3aedd0f2940 (diff)
gnu: skewer: Relabel as version 0.2.2.
This is the tag for the given commit. * gnu/packages/bioinformatics.scm (skewer)[version]: Set to 0.2.2. Change-Id: I7f24b0320b5e20ba36e56c0a0708ea64ec7ba86a
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm60
1 files changed, 29 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5761ce0080a..544de8bac84 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16377,40 +16377,38 @@ browser.")
16377 "The contents of this package are free for all uses.")))) 16377 "The contents of this package are free for all uses."))))
16378 16378
16379(define-public skewer 16379(define-public skewer
16380 (let ((commit "978e8e46cba44595ece623e5387749284a86b74b") 16380 (package
16381 (revision "1")) 16381 (name "skewer")
16382 (package 16382 (version "0.2.2")
16383 (name "skewer") 16383 (source
16384 (version (git-version "0" revision commit)) 16384 (origin
16385 (source 16385 (method git-fetch)
16386 (origin 16386 (uri (git-reference
16387 (method git-fetch) 16387 (url "https://github.com/relipmoc/skewer")
16388 (uri (git-reference 16388 (commit version)))
16389 (url "https://github.com/relipmoc/skewer") 16389 (file-name (git-file-name name version))
16390 (commit commit))) 16390 (sha256
16391 (file-name (git-file-name name version)) 16391 (base32
16392 (sha256 16392 "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69"))))
16393 (base32 16393 (build-system gnu-build-system)
16394 "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69")))) 16394 (arguments
16395 (build-system gnu-build-system) 16395 (list
16396 (arguments 16396 #:tests? #f
16397 (list 16397 #:make-flags
16398 #:tests? #f 16398 #~(list "CXXFLAGS=-std=c++11 -c -O2")
16399 #:make-flags 16399 #:phases
16400 #~(list "CXXFLAGS=-std=c++11 -c -O2") 16400 #~(modify-phases %standard-phases
16401 #:phases 16401 (delete 'configure)
16402 #~(modify-phases %standard-phases 16402 (replace 'install
16403 (delete 'configure) 16403 (lambda _
16404 (replace 'install 16404 (install-file "skewer" (string-append #$output "/bin")))))))
16405 (lambda _ 16405 (home-page "https://github.com/relipmoc/skewer")
16406 (install-file "skewer" (string-append #$output "/bin"))))))) 16406 (synopsis "Bit-masked k-difference matching")
16407 (home-page "https://github.com/relipmoc/skewer") 16407 (description "Skewer implements the bit-masked k-difference matching
16408 (synopsis "Bit-masked k-difference matching")
16409 (description "Skewer implements the bit-masked k-difference matching
16410algorithm dedicated to the task of adapter trimming and it is specially 16408algorithm dedicated to the task of adapter trimming and it is specially
16411designed for processing next-generation sequencing (NGS) paired-end 16409designed for processing next-generation sequencing (NGS) paired-end
16412sequences.") 16410sequences.")
16413 (license license:expat)))) 16411 (license license:expat)))
16414 16412
16415(define-public f-seq 16413(define-public f-seq
16416 (let ((commit "6ccded34cff38cf432deed8503648b4a66953f9b") 16414 (let ((commit "6ccded34cff38cf432deed8503648b4a66953f9b")