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authorNicolas Graves <ngraves@ngraves.fr>2026-03-25 19:51:40 +0100
committerSharlatan Hellseher <sharlatanus@gmail.com>2026-03-28 22:00:01 +0000
commitc8bc423b874a9b5abd7804be4d96d9d4a24f3023 (patch)
tree8ff04c58197b64556a5702e948ce4420f1f9e523 /gnu/packages/bioinformatics.scm
parent31affbfd60e9eb0588f1176b73a7c23cb3832947 (diff)
gnu: python-pysam: Update to 0.23.3.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.23.3. [native-inputs]: Replace python-cython-0 by python-cython. Remove python-wheel. Change-Id: I4e93e7ab1a9e763d2d84b6b7601a64e918b0eda8 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm8
1 files changed, 3 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c291579fb23..9a476f3d1fc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6070,17 +6070,16 @@ subgroups.")
6070(define-public python-pysam 6070(define-public python-pysam
6071 (package 6071 (package
6072 (name "python-pysam") 6072 (name "python-pysam")
6073 (version "0.23.0") 6073 (version "0.23.3")
6074 (source (origin 6074 (source (origin
6075 (method git-fetch) 6075 (method git-fetch)
6076 ;; Test data is missing on PyPi.
6077 (uri (git-reference 6076 (uri (git-reference
6078 (url "https://github.com/pysam-developers/pysam") 6077 (url "https://github.com/pysam-developers/pysam")
6079 (commit (string-append "v" version)))) 6078 (commit (string-append "v" version))))
6080 (file-name (git-file-name name version)) 6079 (file-name (git-file-name name version))
6081 (sha256 6080 (sha256
6082 (base32 6081 (base32
6083 "0hk0ks6kqsm8252d0v1lw2d22x1awmxcr165nnhyacwbqh246skl")) 6082 "1kb70fp9mnjl4czhwiahb192lwkq1j357b774ddg533ibj3h7gcz"))
6084 (modules '((guix build utils))) 6083 (modules '((guix build utils)))
6085 (snippet '(begin 6084 (snippet '(begin
6086 ;; FIXME: Unbundle samtools and bcftools. 6085 ;; FIXME: Unbundle samtools and bcftools.
@@ -6118,10 +6117,9 @@ subgroups.")
6118 (inputs 6117 (inputs
6119 (list ncurses curl zlib)) 6118 (list ncurses curl zlib))
6120 (native-inputs 6119 (native-inputs
6121 (list python-cython-0 6120 (list python-cython
6122 python-pytest 6121 python-pytest
6123 python-setuptools 6122 python-setuptools
6124 python-wheel
6125 ;; Dependencies below are are for tests only. 6123 ;; Dependencies below are are for tests only.
6126 samtools 6124 samtools
6127 bcftools)) 6125 bcftools))