diff options
| author | Nicolas Graves <ngraves@ngraves.fr> | 2026-03-25 19:51:40 +0100 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2026-03-28 22:00:01 +0000 |
| commit | c8bc423b874a9b5abd7804be4d96d9d4a24f3023 (patch) | |
| tree | 8ff04c58197b64556a5702e948ce4420f1f9e523 /gnu/packages/bioinformatics.scm | |
| parent | 31affbfd60e9eb0588f1176b73a7c23cb3832947 (diff) | |
gnu: python-pysam: Update to 0.23.3.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.23.3.
[native-inputs]: Replace python-cython-0 by python-cython. Remove
python-wheel.
Change-Id: I4e93e7ab1a9e763d2d84b6b7601a64e918b0eda8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 8 |
1 files changed, 3 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c291579fb23..9a476f3d1fc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm | |||
| @@ -6070,17 +6070,16 @@ subgroups.") | |||
| 6070 | (define-public python-pysam | 6070 | (define-public python-pysam |
| 6071 | (package | 6071 | (package |
| 6072 | (name "python-pysam") | 6072 | (name "python-pysam") |
| 6073 | (version "0.23.0") | 6073 | (version "0.23.3") |
| 6074 | (source (origin | 6074 | (source (origin |
| 6075 | (method git-fetch) | 6075 | (method git-fetch) |
| 6076 | ;; Test data is missing on PyPi. | ||
| 6077 | (uri (git-reference | 6076 | (uri (git-reference |
| 6078 | (url "https://github.com/pysam-developers/pysam") | 6077 | (url "https://github.com/pysam-developers/pysam") |
| 6079 | (commit (string-append "v" version)))) | 6078 | (commit (string-append "v" version)))) |
| 6080 | (file-name (git-file-name name version)) | 6079 | (file-name (git-file-name name version)) |
| 6081 | (sha256 | 6080 | (sha256 |
| 6082 | (base32 | 6081 | (base32 |
| 6083 | "0hk0ks6kqsm8252d0v1lw2d22x1awmxcr165nnhyacwbqh246skl")) | 6082 | "1kb70fp9mnjl4czhwiahb192lwkq1j357b774ddg533ibj3h7gcz")) |
| 6084 | (modules '((guix build utils))) | 6083 | (modules '((guix build utils))) |
| 6085 | (snippet '(begin | 6084 | (snippet '(begin |
| 6086 | ;; FIXME: Unbundle samtools and bcftools. | 6085 | ;; FIXME: Unbundle samtools and bcftools. |
| @@ -6118,10 +6117,9 @@ subgroups.") | |||
| 6118 | (inputs | 6117 | (inputs |
| 6119 | (list ncurses curl zlib)) | 6118 | (list ncurses curl zlib)) |
| 6120 | (native-inputs | 6119 | (native-inputs |
| 6121 | (list python-cython-0 | 6120 | (list python-cython |
| 6122 | python-pytest | 6121 | python-pytest |
| 6123 | python-setuptools | 6122 | python-setuptools |
| 6124 | python-wheel | ||
| 6125 | ;; Dependencies below are are for tests only. | 6123 | ;; Dependencies below are are for tests only. |
| 6126 | samtools | 6124 | samtools |
| 6127 | bcftools)) | 6125 | bcftools)) |
