summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2026-03-04 13:25:30 +0100
committerAndreas Enge <andreas@enge.fr>2026-03-07 11:57:38 +0100
commite994eb8b648464dbcb409c20c7fd8e0b7972b689 (patch)
treeab83d2227536c5b6d7951cc4117aaaa1449ffee4 /gnu/packages/bioinformatics.scm
parentf3a42d40e0016b3d349e8af4f88b032ea6ae2e9e (diff)
gnu: r-singlet: Update to 0.99.8-1.ef4a374.
Yes, this is an update, even though the patch level used to be .26 and now is .8. That's post-semantic versioning. * gnu/packages/bioinformatics.scm (r-singlet): Update to 0.99.8-1.ef4a374. [propagated-inputs]: Add r-statmod. Change-Id: I95d1d60966c68cb8f66d79b6af6cab82bcf16a62
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm10
1 files changed, 6 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fab67e01a4d..68d46178850 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1694,11 +1694,11 @@ the mutation counts.")
1694 (license license:gpl3))) 1694 (license license:gpl3)))
1695 1695
1696(define-public r-singlet 1696(define-public r-singlet
1697 (let ((commit "765a6c45081807a1522f0e8983e2417822a36f36") 1697 (let ((commit "ef4a374f27681477b95d856b74bd3cbbb379308d")
1698 (revision "1")) 1698 (revision "1"))
1699 (package 1699 (package
1700 (name "r-singlet") 1700 (name "r-singlet")
1701 (version (git-version "0.99.26" revision commit)) 1701 (version (git-version "0.99.8" revision commit))
1702 (source (origin 1702 (source (origin
1703 (method git-fetch) 1703 (method git-fetch)
1704 (uri (git-reference 1704 (uri (git-reference
@@ -1707,7 +1707,7 @@ the mutation counts.")
1707 (file-name (git-file-name name version)) 1707 (file-name (git-file-name name version))
1708 (sha256 1708 (sha256
1709 (base32 1709 (base32
1710 "040v8wzl9qr8ribr6qss61fz4698d14cqs8nxbc8hqwiqlpy3vs4")))) 1710 "1s9g3i0ypsnpnal40f223d5lzijxchwaf1kvavyijl75zaj8i6af"))))
1711 (properties `((upstream-name . "singlet"))) 1711 (properties `((upstream-name . "singlet")))
1712 (build-system r-build-system) 1712 (build-system r-build-system)
1713 (propagated-inputs (list r-dplyr 1713 (propagated-inputs (list r-dplyr
@@ -1718,10 +1718,12 @@ the mutation counts.")
1718 r-matrix 1718 r-matrix
1719 r-msigdbr 1719 r-msigdbr
1720 r-rcpp 1720 r-rcpp
1721 ;; See https://github.com/zdebruine/singlet/issues/25
1721 r-rcppml/devel 1722 r-rcppml/devel
1722 r-reshape2 1723 r-reshape2
1723 r-scuttle 1724 r-scuttle
1724 r-seurat)) 1725 r-seurat
1726 r-statmod))
1725 (native-inputs (list r-knitr r-testthat)) 1727 (native-inputs (list r-knitr r-testthat))
1726 (home-page "https://github.com/zdebruine/singlet") 1728 (home-page "https://github.com/zdebruine/singlet")
1727 (synopsis "Non-negative Matrix Factorization for single-cell analysis") 1729 (synopsis "Non-negative Matrix Factorization for single-cell analysis")