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2025-11-07gnu: emacs-gt: Update to 3.2.1.Cayetano Santos1-2/+4
* gnu/packages/emacs-xyz.scm (emacs-gt): Update to 3.2.1. [propagated-inputs]: Add emacs-pdd. Change-Id: I534ddf2f35c2b901bc7830efbd2c1ddcf11eaa8f Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: emacs-go-translate: Rename to emacs-gt.Cayetano Santos1-4/+7
* gnu/packages/emacs-xyz.scm (emacs-go-translate): Deprecate and rename to… (emacs-gt): … this. [name, source, home-page]: Update accordingly. Change-Id: I99bff4f387e54974598f1ab9a26acb3d2a05186b Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: Add emacs-pdd.Cayetano Santos1-0/+24
* gnu/packages/emacs-xyz.scm (emacs-pdd): New variable. Change-Id: I605eb3a33746942e6defa92ff7c258faf9964581 Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: emacs-bqn-mode: Update to 2025-07-06.Cayetano Santos1-2/+2
* gnu/packages/emacs-xyz.scm (emacs-bqn-mode): Update to 2025-07-06. Change-Id: I6b2eae955fcb693564d82629a074b18f7bd48232 Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: emacs-info-plus: Update to 0-5.a2322ad.Cayetano Santos1-3/+4
* gnu/packages/emacs-xyz.scm (emacs-info-plus): Update to 0-5.a2322ad. [arguments]: Disable #:tests?. Change-Id: I63ef215d9b3d66ace0393dbd9048422cedfd5260 Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: emacs-bitbake-modes: Update to 0.8.0.Cayetano Santos1-2/+2
* gnu/packages/emacs-xyz.scm (emacs-bitbake-modes): Update to 0.8.0. Change-Id: I8fe6e9ee376d2751bfa1412a04a510b9556ebc33 Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: emacs-osm: Use new makeinfo phase.Cayetano Santos1-8/+2
* gnu/packages/emacs-xyz.scm (emacs-osm)[#:phases]<makeinfo>: Use emacs-makeinfo. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-11-07gnu: uriparser: Update to 0.9.9.gemmaro1-2/+3
* gnu/packages/web.scm (uriparser): Update to 0.9.9. Change-Id: Ieb31a68806db14ffa9d42ea7cd0c897d08dab099 Signed-off-by: jgart <jgart@dismail.de>
2025-11-07gnu: r-mzr: Skip two tests.Ricardo Wurmus1-0/+6
* gnu/packages/bioconductor.scm (r-mzr)[arguments]: Add phase 'skip-bad-tests. Change-Id: I4395329993eeb76de9c820dcd5077f24acf53709 Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
2025-11-07gnu: Remove python-wget.Sharlatan Hellseher1-21/+0
Project's source has gone <https://bitbucket.org/techtonik/python-wget/>, PyPI shows that the package was updated in 2015 <https://pypi.org/project/wget/#files>. * gnu/packages/python-web.scm (python-wget): Delete variable. Fixes: guix/guix#3321 Change-Id: I4d923baa67ebcfa3cc87620a98a0be30a9c429f7
2025-11-07gnu: Remove python-rawkit.Sharlatan Hellseher1-23/+0
Fails to build, no users in Guix. The project never pass through alpha stage. Notes from upstream: rawkit is still alpha quality software. Until it hits 1.0, it may undergo substantial changes, including breaking API changes. This repository was archived by the owner on Oct 4, 2020. It is now read-only. * gnu/packages/python-xyz.scm (python-rawkit): Delete variable. Fixes: guix/guix#3265 Change-Id: I57950ba736e0b5de1e7a1bdf8cac65ec570cdb00
2025-11-07gnu: Remove python-d2to1.Sharlatan Hellseher1-21/+0
Fails to build, no longer required. Note from upstream: This repository was archived by the owner on Jun 10, 2020. It is now read-only. * gnu/packages/python-xyz.scm (python-d2to1): Delete variable. Fixes: guix/guix#3251 Change-Id: I3c37e8f289026e1e8e5147a666f717c8310b5b9e
2025-11-07gnu: Remove python-paste.Sharlatan Hellseher1-24/+0
Fails to build, no users in Guix. Note from upstream: Paste is in maintenance mode and recently moved from bitbucket to github. Patches are accepted to keep it on life support, but for the most part, please consider using other options. Fixes: guix/guix#3229 * gnu/packages/python-web.scm (python-paste): Delete variable. Change-Id: If4ee8da2a0c49f40676e32a934a6cfff81f3522d
2025-11-07gnu: Remove python-pastescript.Sharlatan Hellseher1-29/+0
It fails to build, no users in Guix. Note from upstream: Paste Script is being maintained on life support. That means that critical bugs will be fixed, and support for new versions of Python will be handled, but other than that new features are not being considered. * gnu/packages/python-web.scm (python-pastescript): Delete variable. Change-Id: I399dcebd3a4329ed80d0eb0d3a2df01266272701
2025-11-07gnu: Remove python-pyportmidi.Sharlatan Hellseher1-31/+0
This package was required only to build frescobaldi which no longer needs it, there are no other users in Guix, and it fails to build, see <https://codeberg.org/guix/guix/pulls/3191>. * gnu/packages/music.scm (python-pyportmidi): Delete variable. Fixes: guix/guix#3202 Change-Id: I2cfff4416dfa0206d8b91b2d6682a2e2dba8ee48
2025-11-07gnu: r-voltron: Update to 0.2.1-1.1c0810b.Ricardo Wurmus1-5/+6
* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.1-1.1c0810b. [propagated-inputs]: Add r-biocsingular. Change-Id: I3ae6971b14ceff7f6e367a3d0ca7dbaff00049ae
2025-11-07gnu: r-greylistchip: Fix tests.Simon Tournier1-1/+4
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add r-biocstyle. Change-Id: I0804d217c7005cdbcd3b344c5cbdc22eec14ddac
2025-11-07gnu: r-colorout: Adjust GCC@14.Simon Tournier1-0/+16
* gnu/packages/cran.scm (r-colorout)[arguments]: New phase that set GCC compiler flag. Change-Id: I7616cbd7918e00faed307dcc41dd6fe9cbc02086
2025-11-07gnu: r-gofuncr: Fix tests.Simon Tournier1-1/+3
* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens. Change-Id: I5c2759b73e98aa67136093c64d77be0a8e21e52d
2025-11-07gnu: r-blavaan: Adjust GCC@14.Simon Tournier1-0/+11
* gnu/packages/cran.scm (r-blavaan)[arguments]: Add phase that decreases GCC@14 strictness. Change-Id: Ic56b3d6ba1b92ee98b57ebfe0db4c1aa2a542b24
2025-11-07gnu: r-densestbayes: Adjust GCC@14.Simon Tournier1-0/+11
* gnu/packages/cran.scm (r-densestbayes)[arguments]: Add phase that decreases GCC@14 strictness. Change-Id: I52c45b9f693d843f25f1d61ef440e5b1cf2808d2
2025-11-07gnu: r-dada2: Adjust GCC@14.Simon Tournier1-0/+10
* gnu/packages/bioconductor.scm (r-dada2)[arguments]: Add phase that decreases GCC@14 strictness. Change-Id: Ie488f6f2ecffa38b1327ec5efb726c49c2c04319
2025-11-07gnu: r-dtwclust: Adjust GCC@14.Simon Tournier1-0/+16
* gnu/packages/cran.scm (r-dtwclust)[arguments]: Add phase that decreases GCC@14 strictness. Change-Id: I4235fb9444e67112ee0906b479445b5b1c5ef7b0
2025-11-07gnu: r-rffc: Adjust to R@4.5.0.Ricardo Wurmus1-0/+16
* gnu/packages/cran.scm (r-rffc)[arguments]: Replace Calloc and Free by R_Calloc and R_Free. Change-Id: I5102fff078f8ca2440dae250b9d439e5440fe394 Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
2025-11-07gnu: r-rcppparallel: Patch TBB task.h.Ricardo Wurmus1-1/+9
Patching this file lets us compile downstream packages without errors. * gnu/packages/cran.scm (r-rcppparallel)[arguments]: Add phase 'gcc-compatibility. Change-Id: I966c09887f1536dcc623d322f6b141fad069e3dd Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
2025-11-07gnu: r-rstan: Adjust GCC@14.Simon Tournier1-1/+7
* gnu/packages/bioconductor.scm (r-rstan)[arguments]: Add phase that decreases GCC@14 strictness. Change-Id: I83920c1acfd944f36625385012f0dd28bbc3decc
2025-11-07gnu: r-chromstar: Adjust R@4.5.0 and GCC@14.Simon Tournier1-0/+17
* gnu/packages/bioinformatics.scm (r-chromstar)[arguments]: Add phase that replaces C-level facilities from R@4.5.0. Change-Id: I16deb4b68beaf5665d57bd2045dc91a043c46e82
2025-11-07gnu: r-chipkernels: Adjust R@4.5.0 and GCC@14.Simon Tournier1-0/+15
* gnu/packages/bioinformatics.scm (r-chipkernels)[arguments]: Add phase that replaces C-level facilities from R@4.5.0. Change-Id: Iac58b4d871160b4cbfd8b71d771c2f2fcf174240
2025-11-07gnu: Remove r-assertive-reflection.Simon Tournier1-26/+0
Package was removed from the CRAN repository and it depends on `'is.R()` removed by R@4.5.0. * gnu/packages/cran.scm (r-assertive-reflection): Delete variable. Change-Id: I373b23e0a450c096799199d719d23dea11f5f9f3
2025-11-07gnu: Remove r-assertive.Simon Tournier1-39/+0
Package was removed from the CRAN repository and its dependency 'r-assertive-reflection' relies on the R procedure 'is.R()' which had been removed in R@4.5.0. * gnu/packages/cran.scm (r-assertive): Delete variable. Change-Id: I1a8126594162b0c0f4ef03a9177fb5b74c4754be
2025-11-07gnu: r-aneufinder: Adjust R@4.5.0 and GCC@14.Simon Tournier1-0/+17
* gnu/packages/bioconductor.scm (r-aneufinder)[arguments]: Add phases that relax GCC@14 strictness when using R@4.5.0 C-level facilities. Change-Id: If524806121e7b6f697b0cdee75cbe1aef3bb7b9a
2025-11-07gnu: r-paralleldist: Adjust GCC@14.Simon Tournier1-0/+10
* gnu/packages/cran.scm (r-paralleldist)[arguments]: Add phase that relax GCC@14 strictness. Change-Id: I7dd04d8547b35cb35fac0d1386185d37239d4a8e
2025-11-07gnu: r-cner: Adjust GCC@14.Simon Tournier1-1/+13
* gnu/packages/bioconductor.scm (r-cner)[arguments]: Add phase that decreases GCC@14 strictness. Change-Id: I25a05c9946305fec133a244f310b0fb949dc67d1
2025-11-07gnu: r-simpleaffy: Adjust GCC@14.Simon Tournier1-0/+16
* gnu/packages/bioconductor.scm (r-simpleaffy)[arguments]: Add phases that turns compilation error into warning. Change-Id: Id73f60872d72c018074a5cd019953bdb2ed6694b
2025-11-07gnu: r-ifultools: Adjust R@4.5.0 and GCC@14.Simon Tournier1-1/+12
* gnu/packages/cran.scm (r-ifultools)[]arguments]: Add phase which adjust C-level facilities Calloc, Free and Realloc. Change-Id: I0414a805af1550be738b2ce0259318dbf3aecf15
2025-11-07gnu: r-decon: Adjust to R@4.5.0 and GCC@14.Simon Tournier1-0/+14
* gnu/packages/cran.scm (r-decon)[arguments]: Add phase which replaces C-level PI by M_PI. Change-Id: I68a5f3ce808761880b6ff7780b2e1781d7164038
2025-11-07gnu: r-rserve: Adjust R@4.5.0 and GCC@14.Simon Tournier1-0/+13
* gnu/packages/cran.scm (r-rserve)[arguments]: Adjust compiler flags. Change-Id: Ic3125adb771fda68a7a0e70c8a6c0c72ff14e3e2
2025-11-07gnu: r-rbamtools: Adjust R@4.5.0 and GCC@14.Simon Tournier1-1/+15
* gnu/packages/cran.scm (r-rbamtools)[arguments]: Replace C-level procedures Calloc and Free by R_Calloc and R_Free. Change-Id: I8611f800ad291c764fa295da7b00083d2bb40e95
2025-11-07gnu: r-harshlight: Adjust to GCC@14.Simon Tournier1-1/+17
* gnu/packages/bioconductor.scm (r-harshlight)[arguments]: Add phases that passes CFLAGS. Change-Id: I54263d82d9fb97253bdbebc2f070d3da7325b163
2025-11-07gnu: r-ibdreg: Adjust to R@4.5.0 and GCC@14.Simon Tournier1-0/+14
* gnu/packages/cran.scm (r-ibdreg)[arguments]: Replace Calloc and Free by R_Calloc and R_Free. Change-Id: I4022505ea4be164588c58f27561fc13d286545e8
2025-11-07gnu: r-rbowtie: Reset zlib as inputs.Simon Tournier1-1/+1
Follow up of c0709a05abd5c96cda8eb56729c7c6fc7d84912f. * gnu/packages/bioconductor.scm(r-rbowtie)[inputs]: Add zlib. Change-Id: I9a7b09e50c7a2d25304925ee05cfce28b6c5e8c8
2025-11-07gnu: r-freetypeharfbuzz: Adjust configure flags for meson-build-system.Simon Tournier1-9/+7
Follow up of 5a361d46bae6e8e9a143908c5a454b1912664394. * gnu/packages/cran.scm (r-freetypeharfbuzz): Remove 'static-package' package procedure. [arguments]<configure-flags>: Adapt flags for meson-build-system. Change-Id: Ia24aac55378c697a4a0c34e989680457e8e22347
2025-11-07gnu: r-ihw: Missing dependencies for tests.Simon Tournier1-1/+1
* gnu/packages/bioconductor.scm (r-ihw)[native-inputs]: Add r-ggplot2 and r-scales. Change-Id: I9777c90bb62ec614daa469941f8db69b0357e961
2025-11-07teams: r: Add manifest.Simon Tournier1-0/+48
* etc/teams/r/r-manifest.scm: New file. Change-Id: I8191136b81a762bdb219fe45dcd6dd022b8cf758
2025-11-07gnu: Add python-dependency-groups.Hartmut Goebel1-0/+20
* gnu/packages/python-web.scm (python-dependency-groups): New variable. Change-Id: I1b284453f9ee0602e71dbfc8c6742cd3802c30f6
2025-11-06gnu: grep: Don't override XFAIL_TESTS on 32bit Hurd.Yelninei1-9/+11
Some tests in grep are marked as XFAIL. Setting XFAIL_TESTS will cause these to fail. Fixes guix/guix#4083. * gnu/packages/base.scm (grep)[arguments]: Move skipping of test-year2038 on 32bit hurd from make-flags to a phase. Change-Id: I4e42fe64f7ff8213bf43147c9e444891d3bedb91 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2025-11-06gnu: chez-irregex: Update to 0.9.11.Zhu Zihao3-13/+61
* gnu/packages/patches/chez-irregex-import-cond-expand.patch: New file. * gnu/local.mk (dist_patch_DATA): New entry for chez-irregex-import-cond-expand.patch. * gnu/packages/chez.scm (chez-irregex): Update to 0.9.11. [source]: Switch to the original upstream and apply the patch. [arguments]<#:test-target><#:tests?>: Disable test since it's not available in Chez. <#:phases>: In phase 'configure', setup CHEZSCHEMELIBDIRS environment variable. In phase 'build', run 'make chez-build'. In phase 'install', run 'make chez-install'. [home-page]: Switch to the original homepage. Change-Id: I1da16657cc41d278803c20ef7d674a8fdc928c00 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2025-11-06file-systems: Support the 'remount' mount flag.Sören Tempel3-2/+4
This allows remounting file systems which are already mounted by the initrd with custom mount options (e.g. /proc with hidepid=2). * gnu/build/file-systems.scm (mount-flags->bit-mask): Map 'remount to MS_REMOUNT. * gnu/system/file-systems.scm (invalid-file-system-flags): Add 'remount to the list of KNOWN-FLAGS. * doc/guix.texi (File Systems): Document it. Fixes: guix/guix#3849 Change-Id: I0ab116a5b4f7bd201e955ecf022e260c63828dc4 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2025-11-06doc: Fix documentation of unattended-upgrade-serviceKjartan Oli Agustsson1-2/+2
* doc/guix.texi (Unattended Upgrades): Replace mention of mcron with Shepherd Timers. Change-Id: I7e0a509a33e15834429ec4cc0b735a5247cff9d9 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2025-11-06gnu: python-django-4: Update to 4.2.26.Charles Roelli1-2/+2
* gnu/packages/django.scm (python-django-4): Update to version 4.2.26. Change-Id: I06278a655b3fa95883944ea374d8e16b9065f1ea Signed-off-by: jgart <jgart@dismail.de>
generated by cgit v1.2.3 (git 2.25.1) at 2026-09-03 06:16:25 +0000