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2026-07-08gnu: r-keyring: And and correct inputs.r-teamJohn Dawson1-5/+3
Add libsecret and which so r-keyring can use the Secret Service API. Delete r-callr and r-mockery, which are not used. * gnu/packages/cran.scm (r-keyring)[inputs]: Add libsecret. [native-inputs]: Remove r-callr and r-mockery; add which. Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-07-08gnu: r-with-tests, r-minimal: Update to 4.6.1.Ricardo Wurmus1-2/+2
* gnu/packages/statistics.scm (r-with-tests): Update to 4.6.1. Change-Id: If3ceba5d856429f89a44706384f28169b656e7a6
2026-07-08gnu: r-sf: Don't depend on openssh.Dariqq1-1/+0
* gnu/packages/cran.scm (r-sf)[inputs]: Remove openssh. Change-Id: I8cf7a78f581d15fe2199af9284e6163efbc1571b Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-07-08gnu: r-parallelly: Don't depend on openssh.Dariqq1-2/+13
* gnu/packages/cran.scm (r-parallelly)[inputs]: Remove openssh. [arguments]: Add a 'pre-check phase to add dummy ssh to PATH. Change-Id: I84a84d1a3ff6797723f3ef20f11a6af3eb646f85 Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-07-08gnu: r-gert: Don't depend on openssh.Dariqq1-1/+1
* gnu/packages/cran.scm (r-gert)[inputs]: Remove openssh. Change-Id: Ida74ed9a9822035f2691165f84d03d716fd0e488 Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-07-08gnu: r-mlr3: Update to 1.7.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-mlr3): Update to 1.7.1. Change-Id: I7af62a2e567ba46b16845e2dd10e618b255d4573
2026-07-08gnu: r-mlr3cluster: Update to 0.4.0.Ricardo Wurmus1-4/+11
* gnu/packages/cran.scm (r-mlr3cluster): Update to 0.4.0. [propagated-inputs]: Remove r-fpc. [native-inputs]: Add r-clustercrit, r-fpc, r-mvtnorm, and r-withr. Change-Id: I984b0673ea81afa5f8076a68aeab84bcd36ab549
2026-07-08gnu: r-distributional: Update to 0.7.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-distributional): Update to 0.7.1. Change-Id: Ie1814dc7bdbd8f54a7a0113acbcc4d72dedfb4a1
2026-07-08gnu: r-factominer: Update to 2.15.Ricardo Wurmus1-2/+3
* gnu/packages/cran.scm (r-factominer): Update to 2.15. [propagated-inputs]: Add r-irlba. Change-Id: I1cac8f285d11da3cd8f49dc9d09e506930e6c132
2026-07-08gnu: r-raceid: Update to 0.4.1.Ricardo Wurmus1-3/+2
* gnu/packages/cran.scm (r-raceid): Update to 0.4.1. [propagated-inputs]: Remove r-harmony. Change-Id: Iad5ac63f21d524f0b8b5e15d7754f31e54ec8dbc
2026-07-08gnu: r-rcppthread: Update to 2.4.0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-rcppthread): Update to 2.4.0. Change-Id: I775eadf69a61a07ef7377312c7c3a880064adf4c
2026-07-08gnu: r-secretbase: Update to 1.3.0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-secretbase): Update to 1.3.0. Change-Id: Ib3d81cc8c91553bb9821488273065bb8d02b9b5c
2026-07-08gnu: r-rstudioapi: Update to 0.19.0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-rstudioapi): Update to 0.19.0. Change-Id: Ie143898f7891d94b6e36c49e0d4782604e5b1422
2026-07-08gnu: r-restfulr: Update to 0.0.17.Ricardo Wurmus1-2/+2
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.17. Change-Id: Iab0c65bc3ad623adaf0ff1b1548874f23a644dcf
2026-07-08gnu: r-hdf5r: Use hdf5-1.10.Ricardo Wurmus1-1/+1
Bizarrely, with the latest hdf5 one tests fails on the build farm, a failure I cannot reproduce locally. * gnu/packages/cran.scm (r-hdf5r)[inputs]: Replace hdf5 with hdf5-1.10. Change-Id: Ia03f374e3c0bfd0b1910b58e6641a7826509a30c
2026-07-08gnu: r-ff: Disable a test.Ricardo Wurmus1-0/+6
* gnu/packages/cran.scm (r-ff)[arguments]: Disable one test. Change-Id: I098c8a45a2570d2b27770be4951cce9fa8367f54
2026-07-08gnu: r-mvtnorm: Disable tests.Ricardo Wurmus1-0/+6
Some tests time out on the build farm. * gnu/packages/cran.scm (r-mvtnorm)[arguments]: Disable tests. Change-Id: Ifac39ba773aa51c67ef869ed3495c04cac209a07
2026-07-08gnu: r-mlr3learners: Update to 0.15.0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.15.0. Change-Id: I7724d08e93a5ca3fe699d9787a2b62f66124de8d
2026-07-08gnu: r-mlr3: Update to 1.7.0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-mlr3): Update to 1.7.0. Change-Id: Id0412ac4961181b2a1053b72be7ec0f397912a55
2026-07-08gnu: r-mlr3misc: Update to 0.22.0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.22.0. Change-Id: Ia40ae4d72a20819de623e0adc5f34d0189fa8830
2026-07-08gnu: r-openssl: Update to 2.4.2.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-openssl): Update to 2.4.2. Change-Id: I569645a4bc0110265aa5732a4cee7cdbc92715ca
2026-07-08gnu: r-rtdists: Update to 0.11-6.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-rtdists): Update to 0.11-6. Change-Id: I56e0fd54036934c30eb2b844f506d99990540b73
2026-07-08gnu: r-dbscan: Update to 1.2.5.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-dbscan): Update to 1.2.5. Change-Id: Iaebf40a220af29b28c52f32d35d62fddd65a71e6
2026-07-08gnu: r-zip: Update to 3.0.0.Ricardo Wurmus1-2/+4
* gnu/packages/cran.scm (r-zip): Update to 3.0.0. [arguments]: Disable tests requiring r-webfakes. Change-Id: Ia9fac5dc28f3c9897278d89bef761295101095fc
2026-07-08gnu: r-ggtreeextra: Update to 1.22.1.Ricardo Wurmus1-2/+2
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.22.1. Change-Id: Ic96882447759e96e0ca5e00e548229d3dec42f20
2026-07-08gnu: r-spectra: Update to 1.22.2.Ricardo Wurmus1-2/+2
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.22.2. Change-Id: Ieb64ba3d0829cfcc0ee6ff36be2f490ee3f76a19
2026-07-08gnu: r-scdblfinder: Update to 1.26.2.Ricardo Wurmus1-2/+2
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.26.2. Change-Id: I2ad7c552501df93639ceabea59068720dbf79429
2026-07-08gnu: r-highs: Update to 1.14.0-2.Ricardo Wurmus1-3/+3
* gnu/packages/cran.scm (r-highs): Update to 1.14.0-2. [native-inputs]: Add r-knitr. Change-Id: I192ddfdd1134dbd085a48b2b257961fa3c00b6d7
2026-07-08gnu: r-qtl2: Update to 0.42.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-qtl2): Update to 0.42. Change-Id: Ie543586a4fb488ce668964d7c206ae8929ee16b3
2026-07-08gnu: r-dunn-test: Update to 1.4.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-dunn-test): Update to 1.4.1. Change-Id: I609d61e1c32cefca768541a80637e641fe48210c
2026-07-08gnu: r-rcppalgos: Update to 2.10.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.10.1. Change-Id: Ia46add01a6b6c1d0c7d022ae01d0ea7977ffbf96
2026-07-08gnu: r-sessioninfo: Update to 1.2.4.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.2.4. Change-Id: Ib5af4baabb7e89f4a6fbd0f2b9297fe38eb59d40
2026-07-08gnu: r-aggregation: Update to 1.0.2.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-aggregation): Update to 1.0.2. Change-Id: I4ee3428bbaf6a2c271610861a6a764c8eb31fc60
2026-07-08gnu: r-dtw: Update to 1.23-3.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-dtw): Update to 1.23-3. Change-Id: Ic2ce3ca95a15cb98281132c0c168a306d84f77cb
2026-07-08gnu: r-cvxr: Update to 1.9.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-cvxr): Update to 1.9.1. Change-Id: I26c86cdb5781b5fc30e10aeadfb0582440bb74fd
2026-07-08gnu: r-mbess: Update to 5.0.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-mbess): Update to 5.0.1. Change-Id: I4a04a645af08a1044ed403dec8d21ef137c6227d
2026-07-08gnu: r-fastglm: Update to 0.1.1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-fastglm): Update to 0.1.1. Change-Id: I5685c8790e1aec36c513890ed3c9c3a09ed65909
2026-07-08gnu: r-tables: Update to 0.9.35.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-tables): Update to 0.9.35. Change-Id: Ibc0cd0e27a467f1652ab993722b06a3c8ee654b3
2026-07-08gnu: r-mvtnorm: Update to 1.4-1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-mvtnorm): Update to 1.4-1. Change-Id: I858534f2e7392390ad10edf09f12fd81e5808ed7
2026-07-08gnu: r-papaja: Update to 0.1.5.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-papaja): Update to 0.1.5. Change-Id: I259f14fc1b26a4f591e51a23620aa94a0bc1e9a9
2026-07-08gnu: r-pak: Update to 0.10.0.Ricardo Wurmus1-2/+3
* gnu/packages/cran.scm (r-pak): Update to 0.10.0. [native-inputs]: Add r-webfakes. Change-Id: I02512872e80821d9595c4639a309bca41094bbd0
2026-07-08gnu: r-deoptimr: Update to 1.2-0.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-deoptimr): Update to 1.2-0. Change-Id: I562e781961a10a74ab388884743ecd0ebb33ea65
2026-07-08gnu: r-bigmemory: Update to 4.6.6.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-bigmemory): Update to 4.6.6. Change-Id: I9e71b957298fc320d2002c45b3d03ffaea849b0a
2026-07-08gnu: r-ggpicrust2: Update to 2.5.17.Ricardo Wurmus1-3/+4
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 2.5.17. [properties]: Update to include r-circlize and r-complexheatmap in 'updater-extra-native-inputs. Change-Id: I787a18ec2efd51ec7a573e7df364526f081c9c35
2026-07-08gnu: r-rsconnect: Update to 1.10.0.Ricardo Wurmus1-3/+5
* gnu/packages/cran.scm (r-rsconnect): Update to 1.10.0. [arguments]: Disable renv test. Change-Id: I6da3d319e24e7172980a1cea83568aed4f8e76b5
2026-07-08gnu: r-callr: Update to 3.8.0.Ricardo Wurmus1-3/+3
* gnu/packages/cran.scm (r-callr): Update to 3.8.0. [propagated-inputs]: Add r-otel. Change-Id: I1073d55bdcc69debf254f60451e0639a71574738
2026-07-08gnu: r-otel: Remove native inputs and disable tests.Ricardo Wurmus1-7/+3
r-callr depends on r-otel and so we cannot include anything that would use r-callr. * gnu/packages/cran.scm (r-otel)[native-inputs]: Remove r-callr, r-cli, r-jsonlite, r-processx, r-spelling, r-testthat, and r-withr. [arguments]: Disable tests. Change-Id: Icc8eb8cb46eaba3e9809fa7e30e83ef1811f11bf
2026-07-08gnu: r-qs2: Update to 0.2.2.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-qs2): Update to 0.2.2. Change-Id: I0b40138b01e480cce051f637206302cd880ba389
2026-07-08gnu: r-nanoarrow: Update to 0.8.0-1.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-nanoarrow): Update to 0.8.0-1. Change-Id: I79bfb50b300de13e3aa6b5a92584a8cd826fa759
2026-07-08gnu: r-harmony: Update to 2.0.4.Ricardo Wurmus1-2/+2
* gnu/packages/cran.scm (r-harmony): Update to 2.0.4. Change-Id: Ie7683e23351ec6ce17b1afdee931073dc6c3e085
generated by cgit v1.2.3 (git 2.25.1) at 2026-09-03 06:20:53 +0000