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Age	Commit message (Expand)	Author	Files	Lines
2026-01-25	gnu: python-decoupler: Update to 2.1.2.	Sharlatan Hellseher	1	-2/+9
2026-01-25	gnu: python-iced: Update to 0.6.0.	Sharlatan Hellseher	1	-7/+8
2026-01-25	gnu: python-muon: Use python-numpy@1.	Sharlatan Hellseher	1	-4/+2
2026-01-25	gnu: python-pygenometracks: Update to 3.9.	Sharlatan Hellseher	1	-20/+24
2026-01-25	gnu: python-hicmatrix: Update to 17.2.	Sharlatan Hellseher	1	-23/+17
2026-01-25	gnu: pigx-scrnaseq: Use python-numpy@1.	Sharlatan Hellseher	1	-1/+1
2026-01-25	gnu: scvelo: Update to 0.3.3.	Sharlatan Hellseher	1	-30/+32
2026-01-25	gnu: python-hic2cool: Fix tests.	Sharlatan Hellseher	1	-6/+6
2026-01-25	gnu: python-episcanpy: Use python-numpy@1.	Sharlatan Hellseher	1	-2/+4
2026-01-25	gnu: python-drep: Update to 3.6.2-0.7b4b8fb.	Sharlatan Hellseher	1	-7/+70
2026-01-25	gnu: python-mygene: Switch to pyproject.	Sharlatan Hellseher	1	-4/+11
2026-01-25	gnu: python-deeptools: Update to 3.5.6.	Sharlatan Hellseher	1	-16/+10
2026-01-25	gnu: cnvkit: Update to 0.9.12-0.52f367b.	Sharlatan Hellseher	1	-5/+10
2026-01-25	gnu: python-pyfaidx: Update to 0.9.0.3.	Sharlatan Hellseher	1	-14/+12
2026-01-25	gnu: python-presto: Improve package, fix tests.	Sharlatan Hellseher	1	-14/+22
2026-01-25	gnu: macs-3: Update to 3.0.3.	Sharlatan Hellseher	1	-14/+2
2026-01-25	gnu: python-cellbender: Update to 0.3.2.	Sharlatan Hellseher	1	-11/+24
2026-01-25	gnu: mageck: Use python-numpy@1.	Sharlatan Hellseher	1	-2/+2
2026-01-25	gnu: idr: Fix build.	Sharlatan Hellseher	1	-2/+2
2026-01-25	gnu: python-cnmf: Update to 1.7.0.	Sharlatan Hellseher	1	-5/+13
2026-01-25	gnu: python-cooltools: Update to 0.7.1.	Sharlatan Hellseher	1	-8/+20
2026-01-25	gnu: python-magic-impute: Update to 3.0.0.	Sharlatan Hellseher	1	-8/+13
2026-01-25	gnu: Add python-scprep.	Sharlatan Hellseher	1	-2/+104
2026-01-25	gnu: python-fcsparser: Use python-numpy@1.	Sharlatan Hellseher	1	-1/+2
2026-01-25	gnu: python-metacells: Simplify.	Sharlatan Hellseher	1	-6/+5
2026-01-25	gnu: htseq: Update to 2.0.9.	Sharlatan Hellseher	1	-6/+4
2026-01-25	gnu: python-coolbox: Update to 0.3.9.	Sharlatan Hellseher	1	-14/+36
2026-01-25	gnu: python-cooler: Update to 0.10.4.	Sharlatan Hellseher	1	-14/+22
2026-01-25	gnu: python-circe: Update to 0.3.9.	Sharlatan Hellseher	1	-20/+25
2026-01-25	gnu: python-scanpy: Update to 1.11.5.	Sharlatan Hellseher	1	-122/+94
2026-01-25	gnu: python-biopython: Update to 1.86.	Sharlatan Hellseher	1	-17/+16
2026-01-25	gnu: pyscenic: Add missing python-diptest.	Sharlatan Hellseher	1	-0/+1
2026-01-25	gnu: python-scikit-bio: Update to 0.7.1.post1.	Sharlatan Hellseher	1	-23/+19
2026-01-25	gnu: python-biom-format: Update to 2.1.17.	Sharlatan Hellseher	1	-39/+24
2026-01-25	gnu: crossmap: Update to 0.7.3.	Sharlatan Hellseher	1	-5/+5
2026-01-25	gnu: python-loompy: Update to 3.0.8.	Sharlatan Hellseher	1	-4/+3
2026-01-25	gnu: python-arboreto: Update to 0.1.6-0.79f916b.	Sharlatan Hellseher	1	-14/+26
2026-01-25	gnu: pyscenic: Update to 0.12.1-2.06bafba4.	Sharlatan Hellseher	1	-4/+4
2026-01-25	gnu: cpat: Update to 3.0.5.	Sharlatan Hellseher	1	-23/+24
2026-01-25	gnu: checkm: Update to 1.2.4.	Sharlatan Hellseher	1	-11/+29
2026-01-25	gnu: python-dendropy: Update to 5.0.8.	Sharlatan Hellseher	1	-21/+12
2026-01-25	gnu: biobambam2: Update to 2.0.185.	Hartmut Goebel	1	-3/+3
2026-01-25	gnu: libmaus2: Update to 2.0.813.	Hartmut Goebel	1	-3/+7
2026-01-13	gnu: ccwl: Update to 0.5.0.	Arun Isaac	1	-3/+4
2026-01-09	gnu: flexbar: Update to 3.5.0.	Cayetano Santos	1	-18/+17
2026-01-08	gnu: hh-suite: Adjust for GCC@14.	Simon Tournier	1	-1/+11
2026-01-08	gnu: phyml: Add font required by documentation.	Simon Tournier	1	-0/+2
2026-01-08	gnu: velvet: Adjust for GCC@14 and documentation building.	Simon Tournier	1	-2/+9
2026-01-05	gnu: Remove khmer.	Andreas Enge	1	-80/+0
2025-12-31	gnu: cnvkit: Fix tests.	Sharlatan Hellseher	1	-3/+12