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2026-08-08gnu: python-nrepl: Update to 0.3.4.python-teamSharlatan Hellseher1-2/+2
* gnu/packages/python-xyz.scm (python-nrepl): Update to 0.3.4.
2026-08-08gnu: python-liana-py: Update to 1.8.1.Sharlatan Hellseher1-82/+55
* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.8.1. [arguments] <#:test-flags>: Rework sipped/ignored tests. [propagated-inputs]: Remove python-hypothesis, python-ipykernel, python-ipython, python-nbconvert, python-nbsphinx, python-numpy, python-pandas, python-pypandoc, python-scipy, python-statsmodels, and tzdata; add python-numba, python-docrep, python-session-info2, python-pandas-2, python-gseapy, python-kneed, python-mofapy2, python-mofax, and python-muon.
2026-08-08gnu: python-ete3: Fix build.Sharlatan Hellseher1-2/+3
* gnu/packages/bioinformatics.scm (python-ete3): [propagated-inputs]: Add python-six. [native-inputs]: Remove python-wheel.
2026-08-08gnu: python-ega-download-client: Disable tests.Sharlatan Hellseher1-0/+5
* gnu/packages/bioinformatics.scm (python-ega-download-client): [arguments] <#:tests?>: Disable for now.
2026-08-08gnu: python-celery: Skip 2 more tests.Sharlatan Hellseher1-3/+6
* gnu/packages/python-xyz.scm (python-celery): [arguments] <#:test-flags>: Skip 2 more failing tests.
2026-08-08gnu: python-cplot: Remove python-wheel.Sharlatan Hellseher1-5/+4
* gnu/packages/python-xyz.scm (python-cplot): [native-inputs]: Remove python-wheel.
2026-08-08gnu: python-matplotx: Adjust inputs.Sharlatan Hellseher1-3/+5
* gnu/packages/python-xyz.scm (python-matplotx): [propagated-inputs]: Add python-networkx, python-pypng, and python-scipy. [native-inputs]: Remove python-networkx and python-pypng.
2026-08-08gnu: python-asynckivy: Update to 0.11.0.Sharlatan Hellseher1-15/+11
* gnu/packages/python-graphics.scm (python-asynckivy): Update to 0.11.0. [arguments] <#:tests?>: Disable for now. [phases]{set-home}: Remove phase. [propagated-inputs]: Remove python-kivy. [native-inputs]: Remove python-pytest.
2026-08-08gnu: python-asyncgui: Update to 0.11.1.Sharlatan Hellseher1-5/+8
* gnu/packages/python-graphics.scm (python-asyncgui): Update to 0.11.1. [arguments] <#:build-backend>: Pin to "poetry.core.masonry.api".
2026-08-08gnu: python-kivy: Update to 2.3.1-1.92d2cc2.Sharlatan Hellseher1-3/+3
* gnu/packages/python-graphics.scm (python-kivy): Update to 92d2cc2f56453c55ae7913e1a64809df6cc61ae5 commit.
2026-08-08gnu: plover: Update to 5.4.0.Sharlatan Hellseher1-3/+4
* gnu/packages/stenography.scm (plover): Update to 5.4.0. [propagated-inputs]: Remove python-dbus-1.2; add python-comrak and python-dbus.
2026-08-08gnu: python-readme-renderer: Update to 45.0.Sharlatan Hellseher1-22/+13
* gnu/packages/python-xyz.scm (python-readme-renderer): Update to 45.0. [propagated-inputs]: Remove python-cmarkgfm; add python-comrak. [native-inputs]: Remove python-wheel.
2026-08-08gnu: Add python-comrak.Sharlatan Hellseher2-0/+144
* gnu/packages/python-xyz.scm (python-comrak): New variable. * gnu/packages/rust-crates.scm (rust-unicode-ident-1.0.16, rust-tinyvec-1.8.1, rust-syn-2.0.98, rust-serde-derive-1.0.217, rust-serde-1.0.217, rust-quote-1.0.38, rust-pyo3-macros-backend-0.29.0, rust-pyo3-macros-0.29.0, rust-pyo3-ffi-0.29.0, rust-pyo3-build-config-0.29.0, rust-pyo3-0.29.0, rust-proc-macro2-1.0.93, rust-portable-atomic-1.10.0, rust-emojis-0.8.2, rust-comrak-0.54.0): New variables. (lookup-cargo-inputs): Register python-comrak.
2026-08-08gnu: onionshare: Relax python-pyside-6 requirement.Nicolas Graves1-0/+7
* gnu/packages/tor.scm (onionshare)[arguments]{phases}: Add phase relax-more-requirements. Merges: guix/guix!10412 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-pyside-6: Install dist info.Nicolas Graves1-15/+29
* gnu/packages/qt.scm (python-pyside-6)[arguments] {imported-modules, modules}: Add pyproject modules. {phases}: Add phase 'install-distinfo, rewrite phase 'fix-qt-module-detection. Relates-to: guix/guix!10412 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-shiboken-6: Install dist info.Nicolas Graves1-10/+27
* gnu/packages/qt.scm (python-shiboken-6)[arguments] {imported-modules, modules}: Inject pyproject modules. {phases}: Add phase 'install-distinfo. Split phase 'make-files-writable-and-update-timestamps into two phases, one directly injected from pyproject phases. Relates-to: guix/guix!10412 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: onionshare-cli: Update to 2.6.5.Nicolas Graves1-12/+42
* gnu/packages/tor.scm (onionshare-cli): Update to 2.6.5. [source]: Delete some uneeded source files and directories. [propagated-inputs]: Add python-pkgonfig. [arguments]{phases}: Rewrite phase relax-requirements. Relates-to: guix/guix!10412 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-flask-compress: Update to 1.24.Nicolas Graves1-10/+13
* gnu/packages/python-web.scm (python-flask-compress): Update to 1.24. [source]: Switch to git-fetch. [propagated-inputs]: Replace python-pyzstd by python-backports-zstd. Relates-to: guix/guix!10412 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-osmnx: Update to 2.1.1.Sharlatan Hellseher1-36/+31
* gnu/packages/geo.scm (python-osmnx): Update to 2.1.1. [arguments] <#:tests?, #:test-flags>: Disable for now as they depend on network access. [propagated-inputs]: Remove python-folium; add python-rasterio, python-scikit-learn, and python-scipy. [native-inputs]: Remove python-wheel. [description]: Fix fill column indentation.
2026-08-08gnu: python-geopandas: Update to 1.1.4.Sharlatan Hellseher1-2/+4
* gnu/packages/geo.scm (python-geopandas): Update to 1.1.4. [source] <snippet>: Delete versioneer.py file. [native-inputs]: Add python-versioneer.
2026-08-08gnu: orange: Fix build by using python-pandas@2 and python-numpy@1.Sharlatan Hellseher1-2/+2
* gnu/packages/orange.scm (orange): [inputs]: Replace python-numpy and python-pandas by python-numpy-1 and python-pandas-2.
2026-08-08gnu: python-flox: Update to 0.11.2-0.d2857f3.Sharlatan Hellseher1-29/+63
* gnu/packages/python-science.scm (python-flox): Update to d2857f323a3f5b7c737b34e8cfc09492cc9ef2bf commit. [arguments] <#:test-flags>: Rework ignored and skipped tests. [propagated-inputs]: Add python-cachey, python-cftime, python-dask, python-lxml, python-matplotlib, python-numba, python-numbagg, python-sparse, python-xarray, and python-zarr. [native-inputs]: Remove python-dask, python-numbagg, python-sparse, and python-xarray. [description]: Start from a new line, fix fill column indentation.
2026-08-08gnu: python-selenium: Relax requirement on urllib3.Sharlatan Hellseher1-1/+1
* gnu/packages/python-web.scm (python-selenium): [phases]{relax-requirements}: Add urllib3 to the scope.
2026-08-08gnu: Add python-cachey.Sharlatan Hellseher1-0/+26
* gnu/packages/python-xyz.scm (python-cachey): New variable.
2026-08-08gnu: python-asyncua: Update to 2.0.1.Sharlatan Hellseher1-10/+15
* gnu/packages/engineering.scm (python-asyncua): Update to 2.0.1. [arguments] <#:test-flags>: Skip one test. [propagated-inputs]: Remove python-aiofiles; add python-anyio.
2026-08-08gnu: python-pytensor: Update to 3.2.4.Nicolas Graves1-2/+2
* gnu/packages/python-science.scm (python-pytensor): Update to 3.2.4. Merges: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-grandalf: Fix build.Nicolas Graves1-2/+10
* gnu/packages/python-xyz.scm (python-grandalf)[source] {patches}: Add patch to fix the latest numpy bump. Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-scikit-bio: Update to 0.7.3.Nicolas Graves1-9/+27
* gnu/packages/bioinformatics.scm (python-scikit-bio): Update to 0.7.3. [source]{patches}: Add bugfix patch for pandas@3.0 incompatibilities. [native-inputs]: Add python-dateutil, python-matplotlib, python-numpy, python-patsy, python-responses, python-statsmodels. [home-page]: Refresh it. Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-qnorm: Fix build.Nicolas Graves1-0/+14
* gnu/packages/python-xyz.scm (python-qnorm)[arguments]{phases}: Add phase 'fix-pandas-3. Fix suggested-by gen-AI Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-salib: Fix build.Nicolas Graves1-0/+10
* gnu/packages/python-science.scm (python-salib)[arguments] {phases}: Add phase fix-for-pandas-3. Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-asyncua: Remove uneeded input.Nicolas Graves1-2/+1
* gnu/packages/engineering.scm (python-asyncua)[propagated-inputs]: Remove python-wait-for2. Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-wsgiprox: Fix build.Nicolas Graves1-1/+4
* gnu/packages/python-web.scm (python-wsgiprox)[propagated-inputs]: Add missing python-six. Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: mogan: Fix build.Nicolas Graves1-0/+1
* gnu/packages/text-editors.scm (mogan)[arguments]{phases}: Delete phase fix-icon-directory to fix build. Relates-to: guix/guix!10394 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-pyts: Fix build.Nicolas Graves1-1/+11
* gnu/packages/python-science.scm (python-pyts)[arguments]{phases}: Add phase fix-scikit-learn-compat. Merges: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-pot: Update to 0.9.7.post1.Nicolas Graves1-2/+15
* gnu/packages/machine-learning.scm (python-pot): Update to 0.9.7.post1. [arguments]{phases}: Add phase 'use-system-eigen. [inputs]: Add eigen. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-telethon: Update to 1.44.0.Nicolas Graves1-3/+16
* gnu/packages/python-xyz.scm (python-telethon): Update to 1.44.0. [arguments]{phases}: Add phase generate-tl-code. [native-inputs]: Add python-hatchling. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-pymc: Update to 6.2.0.Nicolas Graves1-2/+2
* gnu/packages/statistics.scm (python-pymc): Update to 6.2.0. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-verde: Update to 1.9.0.Nicolas Graves1-6/+15
* gnu/packages/geo.scm (python-verde): Update to 1.9.0. [source]: Switch to git-fetch. [arguments]{test-flags}: Ignore some tests due to a regression because of the scikit-learn update. [native-inputs]: Add python-setuptools-scm. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-numbagg: Ignore failing tests.Nicolas Graves1-3/+19
* gnu/packages/python-science.scm (python-numbagg)[arguments] {test-flags}: Ignore tests failing because of Pandas@3.0. These are edge cases, they probably don't affect other dependencies. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-torchdiffeq: Update to 0.2.5-1.657943a.Nicolas Graves1-4/+8
* gnu/packages/machine-learning.scm (python-torchdiffeq): Update to 0.2.5-1.657943a. [arguments]{test-flags}: Refresh them. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-onnxscript: Update to 0.6.2.Nicolas Graves1-3/+9
* gnu/packages/speech.scm (python-onnxscript): Update to 0.6.2. [arguments]{test-flags}: Ignore a failing test. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-onnx-ir: Update to 0.2.1.Nicolas Graves1-2/+2
* gnu/packages/speech.scm (python-onnx-ir): Update to 0.2.1. Relates-to: guix/guix!10413 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-restructuredtext-lint: Update to 2.0.2.Nicolas Graves1-2/+2
* gnu/packages/python-xyz.scm (python-restructuredtext-lint): Update to 2.0.2. Relates-to: guix/guix!10354 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-lifelines: Update to 0.30.3.Nicolas Graves1-3/+3
* gnu/packages/statistics.scm (python-lifelines): Update to 0.30.3. [propagated-inputs]: Replace python-pandas by python-pandas-2. Relates-to: guix/guix!10354 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-formulaic: Fix tests.Nicolas Graves1-1/+2
* gnu/packages/python-science.scm (python-fomulaic)[native-inputs]: Add python-sympy. Relates-to: guix/guix!10354 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-08-08gnu: python-petrofit: Skip 3 tests.Sharlatan Hellseher1-3/+12
* gnu/packages/astronomy.scm (python-petrofit): [arguments] <#:test-flags>: Skip 3 failing tests.
2026-08-08gnu: python-muon: Update to 0.1.7-0.05d3bf1.Sharlatan Hellseher1-37/+48
* gnu/packages/bioinformatics.scm (python-muon): Update to 05d3bf11f55ccc656e2f10a1466e185b0302aa52 commit. [arguments] <#:test-flags>: Rework skipped tests. [propagated-inputs]: Remove python-numpy-1; add python-numpy. [native-inputs]: Add nss-certs-for-test.
2026-08-08gnu: python-doc8: Update to 2.0.0.Sharlatan Hellseher1-10/+11
* gnu/packages/python-check.scm (python-doc8): Update to 2.0.0. [source]: Switch to git-fetch. [propagated-inputs]: Remove python-docutils and python-tomli; add python-docutils-0.19. [native-inputs]: Remove python-wheel. [home-page]: Fix URL as project's development has been moved to GitHub.
2026-08-08gnu: python-cooltools: Fix build by using python-pandas@2.Sharlatan Hellseher1-2/+5
* gnu/packages/bioinformatics.scm (python-cooltools): [phases]{set-HOME}: New phase. [propagated-inputs]: Replace python-pandas with python-pandas-2.
2026-08-08gnu: python-kanon: Fix build by using python-pandas@2.Sharlatan Hellseher1-1/+1
* gnu/packages/astronomy.scm (python-kanon): [propagated-inputs]: Replace python-pandas with python-pandas-2.
generated by cgit v1.2.3 (git 2.25.1) at 2026-09-03 07:43:27 +0000