From 371f6e9535bfba03bf2d17ef39d7e2262334664a Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Thu, 16 Jul 2026 15:49:20 +0100 Subject: gnu: Remove python-deepdish. * gnu/packages/python-science.scm (python-deepdish): Delete variable. Relates-to: guix/guix#6610 Signed-off-by: Liliana Marie Prikler --- gnu/packages/python-science.scm | 60 ----------------------------------------- 1 file changed, 60 deletions(-) (limited to 'gnu/packages/python-science.scm') diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index dd793b0eb52..fd22192a292 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1103,66 +1103,6 @@ possible to interoperate several fitting programs. Particular interest is given to programs dedicated to amplitude analyses.") (license license:bsd-3))) -(define-public python-deepdish - ;; XXX: The project may no longer be compatible with the version of NumPy - ;; packed in Guix (now 1.26.4, and 2.3.1), use the latest commit containing - ;; fixes. See: . - ;; However, there is a maintained fork that appears to be a good - ;; replacement: https://github.com/portugueslab/flammkuchen. - (let ((commit "3f2dff7a03f1b31f6924b665ad5b8c299329c1cd") - (revision "0")) - (package - (name "python-deepdish") - (version (git-version "0.3.7" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/uchicago-cs/deepdish") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1n3r6z5zd18kdmzyg1gkm9lqi573szlxbls1ck5wjn4a14ar9fw3")))) - (arguments - ;; Disable few failing tests to pass the build. - (list - #:test-flags - #~(list "-k" (string-append "not test_pad" - " and not test_pad_repeat_border" - " and not test_pad_repeat_border_corner" - " and not test_pad_to_size")) - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'dont-vendor-six - (lambda _ - (delete-file "deepdish/six.py") - (substitute* "deepdish/io/hdf5io.py" - (("from deepdish import six") "import six")) - (substitute* "deepdish/io/ls.py" - (("from deepdish import io, six, __version__") - "from deepdish import io, __version__ -import six -"))))))) - (build-system pyproject-build-system) - (native-inputs - (list python-pytest - python-pandas - python-setuptools)) - (propagated-inputs - (list python-numpy-1 - python-scipy - python-six - python-tables)) - (home-page "https://github.com/uchicago-cs/deepdish") - (synopsis "Python library for HDF5 file saving and loading") - (description - "Deepdish is a Python library to load and save HDF5 files. -The primary feature of deepdish is its ability to save and load all kinds of -data as HDF5. It can save any Python data structure, offering the same ease -of use as pickling or @code{numpy.save}, but with the language -interoperability offered by HDF5.") - (license license:bsd-3)))) - (define-public python-distributed (package (name "python-distributed") -- cgit v1.2.3