electrophysiology: python-mne-lsl: Enable more tests.

* guix-science/packages/electrophysiology.scm (mne-lsl-data): New variable.
* guix-science/packages/electrophysiology.scm (python-mne-lsl)
  [arguments]<#:test-flags>: Update filters, exclude tests requiring data fetched
  through `git-lfs`, which is currently failing in Guix.
  [native-inputs]: Replace inline definition by mne-lsl-data.

1 files changed, 57 insertions, 20 deletions

diff --git a/guix-science/packages/electrophysiology.scm b/guix-science/packages/electrophysiology.scm
index 9ee105e..8fc4828 100644
--- a/guix-science/packages/electrophysiology.scm
+++ b/guix-science/packages/electrophysiology.scm
@@ -118,6 +118,18 @@
 transmission over the local network.")
     (license license:expat)))
 
+(define mne-lsl-data
+  (origin
+   ;; FIXME: Use `git-fetch/lfs` once
+   ;; <https://codeberg.org/guix/guix/issues/7510> is fixed.
+   (method git-fetch)
+   (uri (git-reference
+         (url "https://github.com/mscheltienne/mne-lsl-datasets")
+         (commit "479b6ea4d86666d4a87fda8d19ff446850348eef")))
+   (file-name "mne-lsl-data")
+   (sha256
+    (base32 "08cqjx5lwwgyda0m6amp7ggmv701g3hzjayhqwkl845cw4563j0r"))))
+
 (define mne-sample-data
   (package
     (name "mne-sample-data")
@@ -1886,18 +1898,48 @@ components that stem from an Independent Component Analysis (ICA).")
     (arguments
      (list
       #:test-flags
-      #~(list
-         ;; Requires network access.
-         "--deselect=tests/lsl/test_stream_info.py::test_stream_info_desc_from_info"
-         (string-append "--deselect=tests/stream/test_epochs.py"
-          "::test_epochs_with_irregular_numerical_event_stream_and_first_samp")
+      #~(list "-m"
+         "not slow"
+         ;; Requires external data stored with Git LFS.
+         "--deselect=tests/player/test_player_lsl.py::test_player"
+         "--deselect=tests/player/test_player_lsl.py::test_player_context_manager"
+         "--deselect=tests/player/test_player_lsl.py::test_player_context_manager_raw"
+         (string-append "--deselect=tests/player/test_player_lsl.py"
+                        "::test_player_context_manager_raw_annotations")
+         "--deselect=tests/player/test_player_lsl.py::test_player_invalid_arguments"
+         "--deselect=tests/player/test_player_lsl.py::test_player_stop_invalid"
+         "--deselect=tests/player/test_player_lsl.py::test_player_anonymize"
+         "--deselect=tests/player/test_player_lsl.py::test_player_set_meas_date"
+         "--deselect=tests/player/test_player_lsl.py::test_player_n_repeat_invalid"
+         "--deselect=tests/player/test_player_lsl.py::test_player_push_sample"
+         "--deselect=tests/player/test_player_lsl.py::test_player_push_last_sample"
          "--deselect=tests/stream/test_hpi.py::test_stream_with_hpi"
+         "--deselect=tests/stream/test_stream_lsl.py::test_stream_double_connection"
+         "--deselect=tests/stream/test_stream_lsl.py::test_stream_meas_date_and_anonymize"
+         "--deselect=tests/stream/test_stream_lsl.py::test_stream_channel_types"
+         "--deselect=tests/stream/test_stream_lsl.py::test_stream_channel_names"
+         "--deselect=tests/stream/test_stream_lsl.py::test_stream_channel_units"
+         "--deselect=tests/stream/test_stream_lsl.py::test_stream_invalid_interrupt"
+         "--deselect=tests/stream/test_stream_lsl.py::test_manual_acquisition"
+         "--deselect=tests/stream/test_stream_lsl.py::test_manual_acquisition_errors"
          "--deselect=tests/utils/test_test.py::test_compare_infos"
+         "--deselect=tests/lsl/test_stream_info.py::test_stream_info_desc_from_info"
          "--deselect=tests/utils/test_test.py::test_match_stream_and_raw_data"
-         "--ignore=tests/player/test_player_lsl.py"
-         "--ignore=tests/stream/test_stream_lsl.py"
-         ;; Yields RuntimeError errors.
-         "--ignore=tests/stream/test_epochs.py"
+         ;; Raises RuntimeError.
+         (string-join (list "--deselect=tests/stream/test_epochs.py"
+                       "test_epochs_with_irregular_numerical_event_stream")
+                      "::")
+         (string-join (list "--deselect=tests/stream/test_epochs.py"
+                            "test_epochs_single_event") "::")
+         (string-join (list "--deselect=tests/stream/test_epochs.py"
+                            "test_epochs_with_more_events_than_buffer_size")
+                      "::")
+         (string-join (list "--deselect=tests/stream/test_epochs.py"
+                       "test_epochs_with_irregular_numerical_event_stream_and_event_id")
+                      "::")
+         (string-join (list "--deselect=tests/stream/test_epochs.py"
+                       "test_epochs_with_irregular_numerical_event_stream_with_2_ch_and_event_id")
+                      "::")
          ;; Requires GPU access.
          "--deselect=tests/utils/test_config.py::test_gpu_info")
       #:phases
@@ -1953,17 +1995,12 @@ components that stem from an Independent Component Analysis (ICA).")
                              python-scipy
                              python-tomli))
     (inputs (list liblsl))
-    (native-inputs (list cmake-minimal python-pytest python-setuptools
-                         python-setuptools-scm
-                         (origin
-                           (method git-fetch)
-                           (uri (git-reference (url
-                                                "https://github.com/mscheltienne/mne-lsl-datasets")
-                                               (commit
-                                                "479b6ea4d86666d4a87fda8d19ff446850348eef")))
-                           (file-name "mne-lsl-data")
-                           (sha256 (base32
-                                    "08cqjx5lwwgyda0m6amp7ggmv701g3hzjayhqwkl845cw4563j0r")))))
+    (native-inputs (list cmake-minimal
+                         mne-lsl-data
+                         python-pytest
+                         python-pytest-timeout
+                         python-setuptools
+                         python-setuptools-scm))
     (home-page "https://mne.tools/mne-lsl")
     (synopsis
      "Real-time framework integrated with MNE-Python for online neuroscience