electrophysiology: Update mnelab to 1.5.4.

* guix-science/packages/electrophysiology.scm (mnelab)
  [source]: Update to 1.5.4.
  [arguments]<#:phases>: Remove numpy compatibility phase. Refresh phase
  which fixes requirements.
  [propagated-inputs]: Add onnx and python-{black,isort,pybvrf}.
  [home-page]: Use documentation URL.

1 files changed, 19 insertions, 17 deletions

diff --git a/guix-science/packages/electrophysiology.scm b/guix-science/packages/electrophysiology.scm
index c24cb16..24f6a33 100644
--- a/guix-science/packages/electrophysiology.scm
+++ b/guix-science/packages/electrophysiology.scm
@@ -235,7 +235,7 @@ programming skills.")
 (define-public mnelab
   (package
     (name "mnelab")
-    (version "1.0.8")
+    (version "1.5.4")
     (source
      (origin
        (method git-fetch)
@@ -244,7 +244,7 @@ programming skills.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1za7h42nkvqrppknpci4kwxqr1xh22mv2l5fvfzy74ays1s5i6c6"))))
+        (base32 "1qip9z3060zib1q9pvvs4pa7kn6k4jpr3dlk3xqm06pw5wm77awk"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -254,37 +254,39 @@ programming skills.")
       #:build-backend "hatchling.build"
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-numpy-compatibility
-            (lambda _
-              ;; Fix compatibility with NumPy v1.
-              (substitute* "src/mnelab/io/writers.py"
-                (("numpy\\.rec")
-                 "numpy.core.records"))))
-          (add-after 'unpack 'relax-requirements
+          ;; Fix requirements to pass sanity check.
+          (add-after 'unpack 'fix-requirements
             (lambda _
-              ;; Relax constraints on some requirements.
               (substitute* "pyproject.toml"
-                (("\"numpy.*\",")
-                 "\"numpy\",")
-                (("\"scipy.*\",")
-                 "\"scipy\",")
+                ;; not found by sanity-check
+                (("\"onnx.*\",")
+                 "")
                 (("\"pyside6.*\",")
-                 ""))))
+                 "")
+                ;; no versioned constraints
+                ((">=.*\"")
+                 "\""))))
+
+          ;; Tests require a running display server.
           (add-before 'check 'start-xorg-server
             (lambda _
               (system "Xvfb :99 -screen 0 1024x768x24 &")
               (setenv "DISPLAY" ":99.0"))))))
-    (propagated-inputs (list python-edfio
+    (propagated-inputs (list onnx
+                             python-black
+                             python-edfio
+                             python-isort
                              python-matplotlib
                              python-mne
                              python-numpy
                              python-pybv
+                             python-pybvrf
                              python-pyside-6
                              python-pyxdf
                              python-scipy))
     (native-inputs (list python-hatchling python-pytest python-pytest-qt
                          xorg-server))
-    (home-page "https://github.com/cbrnr/mnelab")
+    (home-page "https://mnelab.readthedocs.io/")
     (synopsis "A graphical user interface for MNE")
     (description
      "MNELAB is a @acronym{GUI, Graphical User Interface} for MNE-Python, a