bioinformatics: python-pydeseq2: Fix build.

* guix-science/packages/bioinformatics.scm (python-pydeseq2)
  [arguments]<#:phases>: Patch pytest configuration to not treat warnings as
  errors.
  [propagated-inputs]: Replace python-anndata-0.11 by python-anndata.

1 files changed, 8 insertions, 1 deletions

diff --git a/guix-science/packages/bioinformatics.scm b/guix-science/packages/bioinformatics.scm
index 2576460..aa629e1 100644
--- a/guix-science/packages/bioinformatics.scm
+++ b/guix-science/packages/bioinformatics.scm
@@ -198,12 +198,19 @@
                "tests/test_utils.py::test_rtd_example_data_loading[True-metadata]")))
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-configuration
+            (lambda _
+              ;; Do not treat warnings as errors.
+              (substitute* "pyproject.toml"
+                (("\"error\",")
+                 ""))))
+
           (add-after 'unpack 'fix-requirements
             (lambda _
               (substitute* "pyproject.toml"
                 (("\"formulaic>=.*\"")
                  "\"formulaic\"")))))))
-    (propagated-inputs (list python-anndata-0.11
+    (propagated-inputs (list python-anndata
                              python-formulaic
                              python-formulaic-contrasts
                              python-matplotlib