bioinformatics: libmaus: Fix build.

* guix-science/packages/bioinformatics.scm (libmaus)
  [arguments]<#:phases>: Add fix-missing-include-cstdint after unpack.

1 files changed, 24 insertions, 0 deletions

diff --git a/guix-science/packages/bioinformatics.scm b/guix-science/packages/bioinformatics.scm
index 47f8675..ae8ce29 100644
--- a/guix-science/packages/bioinformatics.scm
+++ b/guix-science/packages/bioinformatics.scm
@@ -1644,6 +1644,30 @@ between some other projects, specifically AscatNGS and Battenburg.")
              (base32
               "0g92bl37ci8pzkgi2xnn2bck7y655jwcb1bm3mg42mj5lf5x2i5b"))))
    (build-system gnu-build-system)
+   (arguments
+    (list
+     #:phases
+     #~(modify-phases %standard-phases
+         (add-after 'unpack 'fix-missing-include-cstdint
+           (lambda _
+             (substitute* "src/libmaus/fastx/acgtnMap.hpp"
+               (("#define ACGTNMAP_HPP")
+                "#define ACGTNMAP_HPP\n#include <cstdint>"))
+             (substitute* "src/libmaus/util/I386CacheLineSize.hpp"
+               (("#define I386CACHELINESIZE_HPP")
+                "#define I386CACHELINESIZE_HPP
+#include <cstdint>"))
+             (substitute* "src/libmaus/util/MemUsage.hpp"
+               (("#define MEMUSAGE_HPP")
+                "#define MEMUSAGE_HPP\n#include <cstdint>"))
+             (substitute* "src/libmaus/util/OutputFileNameTools.hpp"
+               (("#define OUTPUTFILENAMETOOLS")
+                "#define OUTPUTFILENAMETOOLS
+#include <cstdint>"))
+             (substitute* "src/libmaus/util/stringFunctions.hpp"
+               (("#define LIBMAUS_UTIL_STRINGFUNCTIONS_HPP")
+                "#define LIBMAUS_UTIL_STRINGFUNCTIONS_HPP
+#include <cstdint>")))))))
    (native-inputs
     (list pkg-config))
    (inputs