electrophysiology: Add mne-cpp.

* guix-science/packages/electrophysiology.scm (mne-cpp): New variable.

Co-Authored-By: Ghislain Vaillant <ghislain.vaillant@inria.fr>

1 files changed, 57 insertions, 0 deletions

diff --git a/guix-science/packages/electrophysiology.scm b/guix-science/packages/electrophysiology.scm
index 0f65e37..e90cb0d 100644
--- a/guix-science/packages/electrophysiology.scm
+++ b/guix-science/packages/electrophysiology.scm
@@ -7,6 +7,7 @@
   #:use-module (gnu packages boost)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
+  #:use-module (gnu packages compression)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages graph)
   #:use-module (gnu packages image-processing)
@@ -27,6 +28,7 @@
   #:use-module (gnu packages time)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
+  #:use-module (guix-science packages algebra)
   #:use-module (guix-science packages machine-learning)
   #:use-module (guix-science packages neuroscience)
   #:use-module (guix-science packages python-xyz)
@@ -274,6 +276,61 @@ powerful analysis methods of MNE-Python to researchers without requiring
 programming skills.")
     (license license:bsd-3)))
 
+(define-public mne-cpp
+  (package
+    (name "mne-cpp")
+    (version "2.3.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/mne-tools/mne-cpp")
+             (commit (string-append "v" version))
+             (recursive? #t)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0nz4lkzhcn6y6xixqv5a9px8bl2zzqcgynag5gl4hmb40ws1vhwi"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:tests? #f ;FIXME
+      #:configure-flags
+      #~(list "-DBUILD_EXAMPLES:BOOL=OFF" "-DBUILD_TESTS:BOOL=ON")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'use-system-skigen
+            (lambda _
+              (substitute* (list "src/libraries/dsp/CMakeLists.txt"
+                                 "src/libraries/sts/CMakeLists.txt")
+                (("set\\(SOURCES")
+                 (string-join (list "find_package(Skigen REQUIRED CONFIG)"
+                                    "set(SOURCES") "\n")))))
+          (add-after 'install 'install-missing-libraries
+            (lambda _
+              (let ((lib (string-append #$output "/lib"))
+                    (out (string-append (getcwd)
+                                        "/../source/out/RelWithDebInfo/lib")))
+                (for-each (lambda (file)
+                            (install-file file lib))
+                          (find-files out
+                                      (lambda (file stat)
+                                        (elf-file? file))))))))))
+    (inputs (list onnxruntime
+                  qtbase
+                  qtmultimedia
+                  qtserialport
+                  qtshadertools
+                  qtsvg
+                  zlib))
+    (native-inputs (list eigen-5 skigen))
+    (home-page "https://mne-cpp.github.io/")
+    (synopsis "C++ framework for real-time functional brain imaging")
+    (description
+     "@code{MNE-CPP} is an open-source, cross-platform C++ framework for
+real-time and offline processing of MEG, EEG, and related neurophysiological
+data.")
+    (license license:bsd-3)))
+
 (define-public mnelab
   (package
     (name "mnelab")