machine-learning: python-geomstats: Fix build.

* guix-science/packages/machine-learning.scm (python-geomstats)
  [arguments]<#:test-flags>: Ignore more flaky tests.
  <#:phases>: Add phase to rename trapz to trapezoid.

1 files changed, 26 insertions, 2 deletions

diff --git a/guix-science/packages/machine-learning.scm b/guix-science/packages/machine-learning.scm
index da6c37f..d8cdd9b 100644
--- a/guix-science/packages/machine-learning.scm
+++ b/guix-science/packages/machine-learning.scm
@@ -558,6 +558,17 @@ length.")
          "not (slow or redundant)"
          ;; Flaky
          (string-join (list
+                       "--deselect=tests/tests_geomstats/test_datasets/test_prepare_graph_data.py"
+                       "TestHyperbolicEmbedding" "test_embed") "::")
+         (string-join (list
+                       "--deselect=tests/tests_geomstats/test_geometry/test_discrete_curves.py"
+                       "TestReparametrizationAligner"
+                       "test_align_in_same_fiber") "::")
+         (string-join (list
+                       "--deselect=tests/tests_geomstats/test_geometry/test_product_hpd_and_siegel_disks.py"
+                       "TestProductHPDMatricesAndSiegelDisksMetric"
+                       "test_squared_dist_is_symmetric") "::")
+         (string-join (list
                        "--deselect=tests/tests_geomstats/test_geometry/test_hpd_matrices.py"
                        "TestMatrixPower" "test_inverse_belongs") "::")
          (string-join (list
@@ -566,8 +577,21 @@ length.")
                        "test_parallel_transport_ivp_norm") "::")
          ;; Requires python-pykeops.
          "--ignore=tests/tests_geomstats/test_varifold.py"
-         ;; Requires jupyter kernel.
-         "--ignore=tests/tests_scripts/test_notebooks.py")))
+         ;; Run unit tests only.
+         "tests/tests_geomstats")
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; see
+          (add-after 'unpack 'rename-trapz-to-trapezoid
+            (lambda _
+              (substitute* (list "geomstats/_backend/__init__.py"
+                            "geomstats/_backend/autograd/__init__.py"
+                            "geomstats/_backend/numpy/__init__.py"
+                            "geomstats/_backend/pytorch/__init__.py"
+                            "geomstats/geometry/functions.py"
+                            "tests/tests_geomstats/test_geometry/data/functions.py")
+                (("trapz")
+                 "trapezoid")))))))
     (propagated-inputs (list python-autograd
                              python-joblib
                              python-matplotlib