electrophysiology: python-yasa: Update to 0.7.0.

* guix-science/packages/electrophysiology.scm (python-yasa)
  [source]: Update to 0.7.0.
  [arguments]<#:test-flags>: Ignore tests requiring external data, network or
optional dependencies.
  [propagated-inputs]: Remove python-{ipywidgets,pyriemann,sleepecg,tensorpac}.
Add python-pooch.
  [native-inputs]: Add tzdata-for-tests.

1 files changed, 22 insertions, 17 deletions

diff --git a/guix-science/packages/electrophysiology.scm b/guix-science/packages/electrophysiology.scm
index 0afcdd7..b8054d9 100644
--- a/guix-science/packages/electrophysiology.scm
+++ b/guix-science/packages/electrophysiology.scm
@@ -3691,7 +3691,7 @@ the Waveform Database (WFDB) specifications.")
 (define-public python-yasa
   (package
     (name "python-yasa")
-    (version "0.6.5")
+    (version "0.7.0")
     (source
      (origin
        (method git-fetch)
@@ -3700,33 +3700,40 @@ the Waveform Database (WFDB) specifications.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "05c7psn1cc03n75csbqz44mznn6hgkhgfchmsxpx3cl69fwbi8c5"))))
+        (base32 "01jal7l2101m7aw3qcsjkhqjqq7v6qdl3g4hgq35gzx95v5vrf2v"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
       #~(list
-         ;; FIXME: Requires lightgbm. To be revisited when lightgbm is updated
-         ;; to a newer major version and provides Python bindings.
-         "--deselect=yasa/tests/test_staging.py::TestStaging")
+         ;; Requires external data.
+         "--ignore=tests/test_detection.py"
+         "--ignore=tests/test_heart.py"
+         "--ignore=tests/test_others.py"
+         "--ignore=tests/test_spectral.py"
+         "--ignore=tests/test_staging.py"
+         "--deselect=tests/test_plotting.py::TestPlotting::test_plot_hypnogram"
+         ;; Requires optional dependencies.
+         "--deselect=tests/test_io.py::TestIO::test_dependence"
+         ;; Requires network.
+         "--deselect=tests/test_fetchers.py::TestFetchers::test_fetch_kwargs"
+         "--deselect=tests/test_fetchers.py::TestFetchers::test_file_download")
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-pytest-configuration
-            (lambda _
-              (substitute* "setup.cfg"
-                (("--cov")
-                 ""))))
           (add-after 'unpack 'fix-requirements
             (lambda _
-              (substitute* "setup.py"
+              (substitute* "pyproject.toml"
                 ((".*lightgbm.*")
                  ""))))
+          (add-before 'build 'set-home
+            (lambda _
+              (setenv "HOME"
+                      (getcwd))))
           (add-before 'build 'set-numba-cache-dir
             (lambda _
               (setenv "NUMBA_CACHE_DIR"
                       (getcwd)))))))
     (propagated-inputs (list python-antropy
-                             python-ipywidgets
                              python-joblib
                              python-lspopt
                              python-matplotlib
@@ -3734,13 +3741,11 @@ the Waveform Database (WFDB) specifications.")
                              python-numba
                              python-numpy
                              python-pandas
-                             python-pyriemann
+                             python-pooch
                              python-scikit-learn
                              python-scipy
-                             python-seaborn
-                             python-sleepecg
-                             python-tensorpac))
-    (native-inputs (list python-pytest python-setuptools))
+                             python-seaborn))
+    (native-inputs (list python-pytest python-setuptools tzdata-for-tests))
     (home-page "https://yasa-sleep.org/")
     (synopsis "Yet Another Spindle Algorithm (YASA)")
     (description