gnu: Remove snakemake-5.

* gnu/packages/python-science.scm (snakemake-5): Delete variable.

Change-Id: I5ed4ed815a0271680ae7c7862a8acc2827b9aff9

1 files changed, 0 insertions, 79 deletions

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 3ec80e60b2b..9d2746f6397 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -6584,85 +6584,6 @@ providing a clean and modern domain specific specification language (DSL) in
 Python style, together with a fast and comfortable execution environment.")
     (license license:expat)))
 
-(define-public snakemake-5
-  (package
-    (name "snakemake")
-    (version "5.32.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/snakemake/snakemake")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0nxp4z81vykv07kv2b6zrwk7ns8s10zqsb7vcignp8695yq3nlcm"))
-       (snippet #~(delete-file "versioneer.py"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      '(list
-        ;; We have no TES support.
-        "--ignore=tests/test_tes.py"
-        ;; This test attempts to change S3 buckets on AWS and fails
-        ;; because there are no AWS credentials.
-        "--ignore=tests/test_tibanna.py"
-        ;; It's a similar story with this test, which requires access
-        ;; to the Google Storage service.
-        "--ignore=tests/test_google_lifesciences.py"
-        ;; Unclear failures.
-        "-k" "not test_lint")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'tabulate-compatibility
-            (lambda _
-              (substitute* "snakemake/dag.py"
-                (("\"job\": rule,")
-                 "\"job\": rule.name,"))))
-          ;; For cluster execution Snakemake will call Python.  Since there is
-          ;; no suitable PYTHONPATH set, cluster execution will fail.  We fix
-          ;; this by calling the snakemake wrapper instead.
-          (add-after 'unpack 'call-wrapper-not-wrapped-snakemake
-            (lambda _
-              (substitute* "snakemake/executors/__init__.py"
-                (("\\{sys.executable\\} -m snakemake")
-                 (string-append #$output "/bin/snakemake")))))
-          (add-before 'check 'pre-check
-            (lambda _ (setenv "HOME" "/tmp"))))))
-    (propagated-inputs
-     (list python-appdirs
-           python-configargparse
-           python-datrie
-           python-docutils
-           python-gitpython
-           python-jinja2
-           python-jsonschema
-           python-nbformat
-           python-networkx
-           python-psutil
-           python-pulp
-           python-pyyaml
-           python-ratelimiter
-           python-requests
-           python-toposort
-           python-wrapt))
-    (native-inputs
-     (list git-minimal
-           python-wrapper
-           python-pytest
-           python-pandas
-           python-requests-mock
-           python-setuptools
-           python-versioneer))
-    (home-page "https://snakemake.readthedocs.io")
-    (synopsis "Python-based execution environment for make-like workflows")
-    (description
-      "Snakemake aims to reduce the complexity of creating workflows by
-providing a clean and modern domain specific specification language (DSL) in
-Python style, together with a fast and comfortable execution environment.")
-    (license license:expat)))
-
 (define-public snakemake-6
   (package
     (name "snakemake")