summaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
authorNicolas Graves <ngraves@ngraves.fr>2026-08-17 22:03:11 +0200
committerAndreas Enge <andreas@enge.fr>2026-08-24 18:03:45 +0200
commit18db7dc94f093e5460607a5e2012dd382ebc8bfa (patch)
treeffc0739a7e27fbd6adce4c29a7657c97914663e0 /gnu/packages
parent3e48dd0e6380009abec9b432891745dd945f2c1a (diff)
gnu: java-htsjdk-latest: Improve style.
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): Run guix style. [arguments]: Improve style, drop trailing #t. [inputs]: Drop input labels. Signed-off-by: Andreas Enge <andreas@enge.fr>
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm35
1 files changed, 19 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dc9d8ac9ebb..11d6fac83ba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8946,23 +8946,26 @@ manipulating HTS data.")
8946 "1lmya1fdjy03mz6zmdmd86j9v9vfhqb3952mqq075navx1i6g4bc")))) 8946 "1lmya1fdjy03mz6zmdmd86j9v9vfhqb3952mqq075navx1i6g4bc"))))
8947 (build-system ant-build-system) 8947 (build-system ant-build-system)
8948 (arguments 8948 (arguments
8949 `(#:tests? #f ; test require Scala 8949 (list
8950 #:jdk ,icedtea-8 8950 #:tests? #f ; test require Scala
8951 #:jar-name "htsjdk.jar" 8951 #:jdk icedtea-8
8952 #:phases 8952 #:jar-name "htsjdk.jar"
8953 (modify-phases %standard-phases 8953 #:phases
8954 (add-after 'unpack 'remove-useless-build.xml 8954 #~(modify-phases %standard-phases
8955 (lambda _ (delete-file "build.xml") #t)) 8955 (add-after 'unpack 'remove-useless-build.xml
8956 ;; The tests require the scalatest package. 8956 (lambda _
8957 (add-after 'unpack 'remove-tests 8957 (delete-file "build.xml")))
8958 (lambda _ (delete-file-recursively "src/test") #t))))) 8958 ;; The tests require the scalatest package.
8959 (add-after 'unpack 'remove-tests
8960 (lambda _
8961 (delete-file-recursively "src/test"))))))
8959 (inputs 8962 (inputs
8960 `(("java-ngs" ,java-ngs) 8963 (list java-commons-compress
8961 ("java-snappy-1" ,java-snappy-1) 8964 java-commons-jexl-2
8962 ("java-commons-compress" ,java-commons-compress) 8965 java-commons-logging-minimal
8963 ("java-commons-logging-minimal" ,java-commons-logging-minimal) 8966 java-ngs
8964 ("java-commons-jexl-2" ,java-commons-jexl-2) 8967 java-snappy-1
8965 ("java-xz" ,java-xz))) 8968 java-xz))
8966 (native-inputs 8969 (native-inputs
8967 (list java-junit)) 8970 (list java-junit))
8968 (home-page "https://samtools.github.io/htsjdk/") 8971 (home-page "https://samtools.github.io/htsjdk/")