diff options
| author | Nicolas Graves <ngraves@ngraves.fr> | 2026-08-17 22:03:11 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2026-08-24 18:03:45 +0200 |
| commit | 18db7dc94f093e5460607a5e2012dd382ebc8bfa (patch) | |
| tree | ffc0739a7e27fbd6adce4c29a7657c97914663e0 /gnu/packages | |
| parent | 3e48dd0e6380009abec9b432891745dd945f2c1a (diff) | |
gnu: java-htsjdk-latest: Improve style.
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): Run guix style.
[arguments]: Improve style, drop trailing #t.
[inputs]: Drop input labels.
Signed-off-by: Andreas Enge <andreas@enge.fr>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 19 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dc9d8ac9ebb..11d6fac83ba 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm | |||
| @@ -8946,23 +8946,26 @@ manipulating HTS data.") | |||
| 8946 | "1lmya1fdjy03mz6zmdmd86j9v9vfhqb3952mqq075navx1i6g4bc")))) | 8946 | "1lmya1fdjy03mz6zmdmd86j9v9vfhqb3952mqq075navx1i6g4bc")))) |
| 8947 | (build-system ant-build-system) | 8947 | (build-system ant-build-system) |
| 8948 | (arguments | 8948 | (arguments |
| 8949 | `(#:tests? #f ; test require Scala | 8949 | (list |
| 8950 | #:jdk ,icedtea-8 | 8950 | #:tests? #f ; test require Scala |
| 8951 | #:jar-name "htsjdk.jar" | 8951 | #:jdk icedtea-8 |
| 8952 | #:phases | 8952 | #:jar-name "htsjdk.jar" |
| 8953 | (modify-phases %standard-phases | 8953 | #:phases |
| 8954 | (add-after 'unpack 'remove-useless-build.xml | 8954 | #~(modify-phases %standard-phases |
| 8955 | (lambda _ (delete-file "build.xml") #t)) | 8955 | (add-after 'unpack 'remove-useless-build.xml |
| 8956 | ;; The tests require the scalatest package. | 8956 | (lambda _ |
| 8957 | (add-after 'unpack 'remove-tests | 8957 | (delete-file "build.xml"))) |
| 8958 | (lambda _ (delete-file-recursively "src/test") #t))))) | 8958 | ;; The tests require the scalatest package. |
| 8959 | (add-after 'unpack 'remove-tests | ||
| 8960 | (lambda _ | ||
| 8961 | (delete-file-recursively "src/test")))))) | ||
| 8959 | (inputs | 8962 | (inputs |
| 8960 | `(("java-ngs" ,java-ngs) | 8963 | (list java-commons-compress |
| 8961 | ("java-snappy-1" ,java-snappy-1) | 8964 | java-commons-jexl-2 |
| 8962 | ("java-commons-compress" ,java-commons-compress) | 8965 | java-commons-logging-minimal |
| 8963 | ("java-commons-logging-minimal" ,java-commons-logging-minimal) | 8966 | java-ngs |
| 8964 | ("java-commons-jexl-2" ,java-commons-jexl-2) | 8967 | java-snappy-1 |
| 8965 | ("java-xz" ,java-xz))) | 8968 | java-xz)) |
| 8966 | (native-inputs | 8969 | (native-inputs |
| 8967 | (list java-junit)) | 8970 | (list java-junit)) |
| 8968 | (home-page "https://samtools.github.io/htsjdk/") | 8971 | (home-page "https://samtools.github.io/htsjdk/") |
