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authorHugo Buddelmeijer <hugo@buddelmeijer.nl>2026-03-16 22:43:32 +0100
committerSharlatan Hellseher <sharlatanus@gmail.com>2026-03-18 22:39:42 +0000
commit81cb51f3b7c2c317e66cd1d47cbb6ef4f026c0b5 (patch)
tree78cf00ea21d045782bf7f6088f731722280dea6b /gnu
parentd840bb186373a3027dbdecbc372d51c2003861af (diff)
gnu: python-metacells: Fix build.
* gnu/packages/bioinformatics.scm (python-metacells): Fix build. [arguments]<#:phases>: Add pre-sanity-check phase. [homepage]: Update with redirect. Change-Id: I9e6c2dfd4d944a589f87716ab8347a161ff630c5 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm8
1 files changed, 6 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ec5af920058..8606bdb180a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3241,7 +3241,11 @@ and gene expression visualization.")
3241 (lambda _ 3241 (lambda _
3242 ;; Numba needs a writable dir to cache functions. 3242 ;; Numba needs a writable dir to cache functions.
3243 (setenv "NUMBA_CACHE_DIR" "/tmp") 3243 (setenv "NUMBA_CACHE_DIR" "/tmp")
3244 (delete-file-recursively "metacells")))))) 3244 (delete-file-recursively "metacells")))
3245 (add-before 'sanity-check 'pre-sanity-check
3246 (lambda _
3247 ;; Numba needs a writable dir to cache functions.
3248 (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
3245 (propagated-inputs (list python-anndata 3249 (propagated-inputs (list python-anndata
3246 python-cvxpy 3250 python-cvxpy
3247 python-fastcluster 3251 python-fastcluster
@@ -3255,7 +3259,7 @@ and gene expression visualization.")
3255 python-threadpoolctl 3259 python-threadpoolctl
3256 python-umap-learn)) 3260 python-umap-learn))
3257 (native-inputs (list pybind11-2 python-pytest python-setuptools)) 3261 (native-inputs (list pybind11-2 python-pytest python-setuptools))
3258 (home-page "https://github.com/tanaylab/metacells.git") 3262 (home-page "https://github.com/tanaylab/metacells")
3259 (synopsis "Single-cell RNA Sequencing Analysis") 3263 (synopsis "Single-cell RNA Sequencing Analysis")
3260 (description "The metacells package implements the improved metacell 3264 (description "The metacells package implements the improved metacell
3261algorithm for single-cell RNA sequencing (scRNA-seq) data analysis within the 3265algorithm for single-cell RNA sequencing (scRNA-seq) data analysis within the