diff options
| author | Andreas Enge <andreas@enge.fr> | 2026-07-15 14:41:55 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2026-08-05 11:02:11 +0200 |
| commit | 84a4a2188627e2b052bc2a5ad9d8e842d13f05b3 (patch) | |
| tree | 66562ff54d22daa3f332a6835dea4c2a61aa2e43 /gnu | |
| parent | 1132fca47589975eab0d9e9717787cf4f9fdbbde (diff) | |
gnu: Remove r-cicero-monocle3.
* gnu/packages/bioconductor.scm (r-cicero-monocle3): Delete variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 0 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 90166e69ceb..5ee2636a1c6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm | |||
| @@ -23000,34 +23000,6 @@ accessibility data. It also extends the monocle package for use in chromatin | |||
| 23000 | accessibility data.") | 23000 | accessibility data.") |
| 23001 | (license license:expat))) | 23001 | (license license:expat))) |
| 23002 | 23002 | ||
| 23003 | ;; This is the latest commit on the "monocle3" branch. | ||
| 23004 | (define-public r-cicero-monocle3 | ||
| 23005 | (let ((commit "495ef0da13cc9ffe55516bfd34f48b671ad55aba") | ||
| 23006 | (revision "1")) | ||
| 23007 | (package (inherit r-cicero) | ||
| 23008 | (name "r-cicero-monocle3") | ||
| 23009 | (version (git-version "1.3.9" revision commit)) | ||
| 23010 | (source | ||
| 23011 | (origin | ||
| 23012 | (method git-fetch) | ||
| 23013 | (uri (git-reference | ||
| 23014 | (url "https://github.com/cole-trapnell-lab/cicero-release") | ||
| 23015 | (commit commit))) | ||
| 23016 | (file-name (git-file-name name version)) | ||
| 23017 | (sha256 | ||
| 23018 | (base32 | ||
| 23019 | "0n1wgjirdfs9vwa37grmfdqmqb1nssa1r5xsssahg4049b126gn3")))) | ||
| 23020 | (arguments | ||
| 23021 | (list | ||
| 23022 | #:skipped-tests | ||
| 23023 | '(("test-runCicero.R" | ||
| 23024 | ;; "nrow(over) not equal to 98." | ||
| 23025 | "find_overlapping_ccans works")))) | ||
| 23026 | (propagated-inputs | ||
| 23027 | (modify-inputs propagated-inputs | ||
| 23028 | (delete "r-monocle") | ||
| 23029 | (prepend r-monocle3)))))) | ||
| 23030 | |||
| 23031 | (define-public r-circrnaprofiler | 23003 | (define-public r-circrnaprofiler |
| 23032 | (package | 23004 | (package |
| 23033 | (name "r-circrnaprofiler") | 23005 | (name "r-circrnaprofiler") |
