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authorAndreas Enge <andreas@enge.fr>2026-07-15 14:41:55 +0200
committerAndreas Enge <andreas@enge.fr>2026-08-05 11:02:11 +0200
commit84a4a2188627e2b052bc2a5ad9d8e842d13f05b3 (patch)
tree66562ff54d22daa3f332a6835dea4c2a61aa2e43 /gnu
parent1132fca47589975eab0d9e9717787cf4f9fdbbde (diff)
gnu: Remove r-cicero-monocle3.
* gnu/packages/bioconductor.scm (r-cicero-monocle3): Delete variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 0 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 90166e69ceb..5ee2636a1c6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -23000,34 +23000,6 @@ accessibility data. It also extends the monocle package for use in chromatin
23000accessibility data.") 23000accessibility data.")
23001 (license license:expat))) 23001 (license license:expat)))
23002 23002
23003;; This is the latest commit on the "monocle3" branch.
23004(define-public r-cicero-monocle3
23005 (let ((commit "495ef0da13cc9ffe55516bfd34f48b671ad55aba")
23006 (revision "1"))
23007 (package (inherit r-cicero)
23008 (name "r-cicero-monocle3")
23009 (version (git-version "1.3.9" revision commit))
23010 (source
23011 (origin
23012 (method git-fetch)
23013 (uri (git-reference
23014 (url "https://github.com/cole-trapnell-lab/cicero-release")
23015 (commit commit)))
23016 (file-name (git-file-name name version))
23017 (sha256
23018 (base32
23019 "0n1wgjirdfs9vwa37grmfdqmqb1nssa1r5xsssahg4049b126gn3"))))
23020 (arguments
23021 (list
23022 #:skipped-tests
23023 '(("test-runCicero.R"
23024 ;; "nrow(over) not equal to 98."
23025 "find_overlapping_ccans works"))))
23026 (propagated-inputs
23027 (modify-inputs propagated-inputs
23028 (delete "r-monocle")
23029 (prepend r-monocle3))))))
23030
23031(define-public r-circrnaprofiler 23003(define-public r-circrnaprofiler
23032 (package 23004 (package
23033 (name "r-circrnaprofiler") 23005 (name "r-circrnaprofiler")