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authorRicardo Wurmus <rekado@elephly.net>2018-07-03 16:19:24 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-07-03 16:20:28 +0200
commitc7d5cd6ca56241c5a17c2c917f6e03a26a03ee15 (patch)
tree9abdb1b9443148f342d7154b07301c0a23465d9a /gnu
parent29cbf8178f7fe97f42005f0d8b32f38c2caee041 (diff)
gnu: pigx-rnaseq: Update to 0.0.4.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.4. [arguments]: Remove "wrap-executable" phase.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm12
1 files changed, 2 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c0ee641e885..e8408b95a46 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12831,7 +12831,7 @@ once. This package provides tools to perform Drop-seq analyses.")
12831(define-public pigx-rnaseq 12831(define-public pigx-rnaseq
12832 (package 12832 (package
12833 (name "pigx-rnaseq") 12833 (name "pigx-rnaseq")
12834 (version "0.0.3") 12834 (version "0.0.4")
12835 (source (origin 12835 (source (origin
12836 (method url-fetch) 12836 (method url-fetch)
12837 (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" 12837 (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/"
@@ -12839,7 +12839,7 @@ once. This package provides tools to perform Drop-seq analyses.")
12839 "/pigx_rnaseq-" version ".tar.gz")) 12839 "/pigx_rnaseq-" version ".tar.gz"))
12840 (sha256 12840 (sha256
12841 (base32 12841 (base32
12842 "0pz080k4ajlc4rlznkn3najy2a6874gb56rf9g4ag9wqz31q174j")))) 12842 "16gla23rmziimqan7w494q0nr7vfbp42zzkrl9fracmr4k7b1kzr"))))
12843 (build-system gnu-build-system) 12843 (build-system gnu-build-system)
12844 (arguments 12844 (arguments
12845 `(#:parallel-tests? #f ; not supported 12845 `(#:parallel-tests? #f ; not supported
@@ -12851,14 +12851,6 @@ once. This package provides tools to perform Drop-seq analyses.")
12851 (substitute* "Makefile.in" 12851 (substitute* "Makefile.in"
12852 (("(^ tests/test_trim_galore/test.sh).*" _ m) m) 12852 (("(^ tests/test_trim_galore/test.sh).*" _ m) m)
12853 (("^ test.sh") "")) 12853 (("^ test.sh") ""))
12854 #t))
12855 (add-after 'install 'wrap-executable
12856 ;; Make sure the executable finds all R modules.
12857 (lambda* (#:key inputs outputs #:allow-other-keys)
12858 (let ((out (assoc-ref outputs "out")))
12859 (wrap-program (string-append out "/bin/pigx-rnaseq")
12860 `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
12861 `("PYTHONPATH" ":" = (,(getenv "PYTHONPATH")))))
12862 #t))))) 12854 #t)))))
12863 (inputs 12855 (inputs
12864 `(("gzip" ,gzip) 12856 `(("gzip" ,gzip)