diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2018-07-03 16:19:24 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-07-03 16:20:28 +0200 |
| commit | c7d5cd6ca56241c5a17c2c917f6e03a26a03ee15 (patch) | |
| tree | 9abdb1b9443148f342d7154b07301c0a23465d9a /gnu | |
| parent | 29cbf8178f7fe97f42005f0d8b32f38c2caee041 (diff) | |
gnu: pigx-rnaseq: Update to 0.0.4.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.4.
[arguments]: Remove "wrap-executable" phase.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 2 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c0ee641e885..e8408b95a46 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm | |||
| @@ -12831,7 +12831,7 @@ once. This package provides tools to perform Drop-seq analyses.") | |||
| 12831 | (define-public pigx-rnaseq | 12831 | (define-public pigx-rnaseq |
| 12832 | (package | 12832 | (package |
| 12833 | (name "pigx-rnaseq") | 12833 | (name "pigx-rnaseq") |
| 12834 | (version "0.0.3") | 12834 | (version "0.0.4") |
| 12835 | (source (origin | 12835 | (source (origin |
| 12836 | (method url-fetch) | 12836 | (method url-fetch) |
| 12837 | (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" | 12837 | (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" |
| @@ -12839,7 +12839,7 @@ once. This package provides tools to perform Drop-seq analyses.") | |||
| 12839 | "/pigx_rnaseq-" version ".tar.gz")) | 12839 | "/pigx_rnaseq-" version ".tar.gz")) |
| 12840 | (sha256 | 12840 | (sha256 |
| 12841 | (base32 | 12841 | (base32 |
| 12842 | "0pz080k4ajlc4rlznkn3najy2a6874gb56rf9g4ag9wqz31q174j")))) | 12842 | "16gla23rmziimqan7w494q0nr7vfbp42zzkrl9fracmr4k7b1kzr")))) |
| 12843 | (build-system gnu-build-system) | 12843 | (build-system gnu-build-system) |
| 12844 | (arguments | 12844 | (arguments |
| 12845 | `(#:parallel-tests? #f ; not supported | 12845 | `(#:parallel-tests? #f ; not supported |
| @@ -12851,14 +12851,6 @@ once. This package provides tools to perform Drop-seq analyses.") | |||
| 12851 | (substitute* "Makefile.in" | 12851 | (substitute* "Makefile.in" |
| 12852 | (("(^ tests/test_trim_galore/test.sh).*" _ m) m) | 12852 | (("(^ tests/test_trim_galore/test.sh).*" _ m) m) |
| 12853 | (("^ test.sh") "")) | 12853 | (("^ test.sh") "")) |
| 12854 | #t)) | ||
| 12855 | (add-after 'install 'wrap-executable | ||
| 12856 | ;; Make sure the executable finds all R modules. | ||
| 12857 | (lambda* (#:key inputs outputs #:allow-other-keys) | ||
| 12858 | (let ((out (assoc-ref outputs "out"))) | ||
| 12859 | (wrap-program (string-append out "/bin/pigx-rnaseq") | ||
| 12860 | `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))) | ||
| 12861 | `("PYTHONPATH" ":" = (,(getenv "PYTHONPATH"))))) | ||
| 12862 | #t))))) | 12854 | #t))))) |
| 12863 | (inputs | 12855 | (inputs |
| 12864 | `(("gzip" ,gzip) | 12856 | `(("gzip" ,gzip) |
