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authorMarius Bakke <marius@gnu.org>2021-12-04 12:22:11 +0100
committerMarius Bakke <marius@gnu.org>2021-12-05 14:02:10 +0100
commitdb5646d957895944007c1bb44fcd998ea392f168 (patch)
treee3812e8deec2bbb37e2ec5a065022b2dfbbbb5a7 /gnu
parentb507cc49abb5492f992aff08f0931365bd4ccd4e (diff)
gnu: Adjust for python-build-system behavior change.
Commit cb72f9a773e0931ee3758c851d96007ded034e4c changed the semantics of SITE-PACKAGES, but did not adjust all callers. * gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Adjust for missing trailing slash. * gnu/packages/maths.scm (nomad-optimizer)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchwork)[arguments]: Likewise.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm3
-rw-r--r--gnu/packages/maths.scm2
-rw-r--r--gnu/packages/patchutils.scm6
3 files changed, 5 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fb3ceb8c836..f3cc1eac89e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15281,8 +15281,7 @@ for the analysis and visualization of raw nanopore signal.")
15281 (lambda* (#:key inputs outputs #:allow-other-keys) 15281 (lambda* (#:key inputs outputs #:allow-other-keys)
15282 (delete-file-recursively (string-append 15282 (delete-file-recursively (string-append
15283 (site-packages inputs outputs) 15283 (site-packages inputs outputs)
15284 "vcf/test")) 15284 "/vcf/test")))))))
15285 #t)))))
15286 (native-inputs `(("python-cython" ,python-cython))) 15285 (native-inputs `(("python-cython" ,python-cython)))
15287 (propagated-inputs 15286 (propagated-inputs
15288 `(("python-pysam" ,python-pysam) 15287 `(("python-pysam" ,python-pysam)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 14aecb955dd..3ff3c14bc88 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2009,7 +2009,7 @@ interfaces.")
2009 (lambda* (#:key inputs outputs #:allow-other-keys) 2009 (lambda* (#:key inputs outputs #:allow-other-keys)
2010 (delete-file (string-append 2010 (delete-file (string-append
2011 (site-packages inputs outputs) 2011 (site-packages inputs outputs)
2012 "PyNomad-0.0.0-py" 2012 "/PyNomad-0.0.0-py"
2013 (python-version (assoc-ref inputs "python")) 2013 (python-version (assoc-ref inputs "python"))
2014 ".egg-info")) 2014 ".egg-info"))
2015 #t))))) 2015 #t)))))
diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm
index 3ad795ac5a0..e5a03d4d281 100644
--- a/gnu/packages/patchutils.scm
+++ b/gnu/packages/patchutils.scm
@@ -390,7 +390,7 @@ application = get_wsgi_application()\n") port)))))
390 (for-each (lambda (directory) 390 (for-each (lambda (directory)
391 (copy-recursively 391 (copy-recursively
392 directory 392 directory
393 (string-append out-site-packages directory))) 393 (string-append out-site-packages "/" directory)))
394 '(;; Contains the python code 394 '(;; Contains the python code
395 "patchwork" 395 "patchwork"
396 ;; Contains the templates for the generated HTML 396 ;; Contains the templates for the generated HTML
@@ -403,9 +403,9 @@ application = get_wsgi_application()\n") port)))))
403 (install-file file (string-append out "/bin"))) 403 (install-file file (string-append out "/bin")))
404 (list 404 (list
405 (string-append out-site-packages 405 (string-append out-site-packages
406 "patchwork/bin/parsemail.sh") 406 "/patchwork/bin/parsemail.sh")
407 (string-append out-site-packages 407 (string-append out-site-packages
408 "patchwork/bin/parsemail-batch.sh"))) 408 "/patchwork/bin/parsemail-batch.sh")))
409 409
410 ;; Collect the static assets, this includes JavaScript, CSS and 410 ;; Collect the static assets, this includes JavaScript, CSS and
411 ;; fonts. This is a standard Django process when running a 411 ;; fonts. This is a standard Django process when running a