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path: root/gnu/packages/bioinformatics.scm
AgeCommit message (Expand)AuthorFilesLines
2026-08-05gnu: Remove filtlong.Andreas Enge1-57/+0
2026-08-05gnu: Remove r-pando.Andreas Enge1-58/+0
2026-08-01gnu: Remove python-episcanpy.Sharlatan Hellseher1-58/+0
2026-07-07gnu: python-bioframe: Update to 0.8.0.Sharlatan Hellseher1-12/+18
2026-07-03gnu: llvm: Switch default llvm to 22.Zheng Junjie1-2/+2
2026-07-01gnu: hisat2: Update to 2.2.2.Spencer King1-2/+7
2026-06-26gnu: python-pybigwig: Update to 0.3.25.Andreas Enge1-11/+14
2026-06-26gnu: libbigwig: Update to 0.4.8.Andreas Enge1-2/+2
2026-06-24gnu: Remove phylip.Andreas Enge1-36/+0
2026-06-19gnu: macs-3: Rename variable to macs.Andreas Enge1-3/+6
2026-06-19gnu: Remove macs.Andreas Enge1-50/+0
2026-06-18gnu: Remove porechop.Andreas Enge1-47/+0
2026-06-14gnu: r-pizzarr: Remove bundled c-blosc and snappy.Danny Milosavljevic1-1/+1
2026-06-09gnu: python-ete3: Fix tests.Ricardo Wurmus1-1/+8
2026-06-03gnu: subread: Update to 2.1.1.Spencer King1-2/+2
2026-05-31gnu: pigx-scrnaseq: Add patch and bump Snakemake.Nicolas Graves1-9/+19
2026-05-31gnu: mudskipper: Update dependencies.Efraim Flashner1-1/+1
2026-05-31gnu: alignoth: Build with current rust.Efraim Flashner1-2/+1
2026-05-30gnu: Remove tombo.Andreas Enge1-34/+0
2026-05-29gnu: pigx-chipseq: Use latest Snakemake.Ricardo Wurmus1-1/+1
2026-05-29gnu: pigx-bsseq: Update to 0.1.10-0.1b3a69b.Ricardo Wurmus1-71/+78
2026-05-29gnu: pigx-sars-cov-2: Use latest Snakemake.Ricardo Wurmus1-1/+1
2026-05-29gnu: Remove pending references to deprecated (gnu packages flex).Anderson Torres1-1/+1
2026-05-29gnu: pigx-rnaseq: Update to 0.1.1-0.1605b54.Ricardo Wurmus1-83/+88
2026-05-29gnu: pigx-scrnaseq: Switch to snakemake-6.Nguyễn Gia Phong1-1/+1
2026-05-28gnu: libbigwig: Modernize.Andreas Enge1-7/+7
2026-05-28gnu: Remove r-seurat-utils.Ricardo Wurmus1-64/+0
2026-05-28gnu: r-misha: Update to 5.6.23.Ricardo Wurmus1-18/+5
2026-05-28gnu: r-spectre: Update to 1.3.0.Ricardo Wurmus1-71/+69
2026-05-28gnu: r-pizzarr: Update to 0.2.0.Ricardo Wurmus1-25/+78
2026-05-28gnu: r-liana: Make compatible with latest version of SeuratObject.Ricardo Wurmus1-1/+10
2026-05-28gnu: r-liana: Replace custom phase with #:skipped-tests.Ricardo Wurmus1-16/+9
2026-05-28gnu: r-voltron: Update to 0.2.6.Ricardo Wurmus1-6/+3
2026-05-28gnu: r-zarrdataframe: Update to 0.0.0-3.f5f6715.Ricardo Wurmus1-4/+4
2026-05-28gnu: r-imagearray: Update to 1.0.0.Ricardo Wurmus1-32/+33
2026-05-28gnu: r-zarrarray: Update to 1.0.0.Ricardo Wurmus1-33/+29
2026-05-28gnu: python-biopython-1.73: Fix build with Python 3.12.Ricardo Wurmus1-1/+4
2026-05-24gnu: python-scprep: Skip more tests.Sharlatan Hellseher1-1/+10
2026-05-24gnu: pigx-scrnaseq: Fix build on Python@3.12.Sharlatan Hellseher1-0/+2
2026-05-24gnu: python-baltica: Build with snakemake@8.Sharlatan Hellseher1-1/+1
2026-05-24gnu: python-bed-reader: Fix build with Python@3.12.Nicolas Graves1-0/+1
2026-05-24gnu: python-arboreto: Fix tests with Python@3.12.Nicolas Graves1-0/+4
2026-05-24gnu: taxtastic: Fix tests.Nicolas Graves1-8/+2
2026-05-24gnu: python-pdbfixer: Update to 1.12.Nicolas Graves1-7/+11
2026-05-24gnu: python-parabam: Add a fixing patch.Nicolas Graves1-1/+11
2026-05-24gnu: python-cooler: Update to 0.10.4-0.6c2d65b.Sharlatan Hellseher1-14/+19
2026-05-24gnu: porechop: Update to 0.2.3-2.109e437.Sharlatan Hellseher1-6/+21
2026-05-24gnu: instrain: Update to 1.10.0-1.f172367.Sharlatan Hellseher1-9/+26
2026-05-24gnu: lofreq: Fix build on Python@3.12.Nicolas Graves1-1/+1
2026-05-24gnu: shorah: Update to 1.99.3.Nicolas Graves1-2/+3
generated by cgit v1.2.3 (git 2.25.1) at 2026-09-03 06:45:09 +0000