gnu: llvm: Switch default llvm to 22.

* gnu/packages/llvm.scm (libomp, llvm, clang-runtime, clang, clang-toolchain):
Switch to llvm-22 version.
(ocaml-llvm): Use llvm-13.
(wllvm)[native-inputs]: Remove clang; add clang-13.
(emacs-clang-format)[arguments]: Use #:lisp-directory, Adjust configure
phase. Add #:test-command.
* gnu/packages/bioinformatics.scm (alignoth)[native-inputs]: Remove clang; add
clang-13.
(lammps)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/bootloaders.scm (make-grub)[inputs]: Remove clang; add
clang-13.
* gnu/packages/c.scm (libdispatch)[native-inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/check.scm (pedansee)[native-inputs]: Remove clang; add
clang-13.
(python-lit)[native-inputs]: Remove llvm; add llvm-13.
* gnu/packages/codex.scm (codex, codex-acp)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/compression.scm (cmix)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/cpp.scm (ccls)[native-inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/darwin.scm (cctools)[inputs]: Remove clang-toolchain; add
clang-toolchain-13.
[native-inputs]: Remove clang-toolchain; add clang-toolchain-13.
* gnu/packages/debug.scm (c-vise)[inputs]: Remove clang and llvm; add clang-13
and llvm-13.
(fandango)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Remove llvm; add
llvm-13.
* gnu/packages/electronics.scm (nvc)[inputs]: Remove llvm; add llvm-13.
(openroad)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/emacs-xyz.scm (emacs-irony-mode-server)[inputs]: Remove clang;
add clang-13.
* gnu/packages/file-systems.scm (bcachefs-tools-minimal)[native-inputs]:
Remove clang; add clang-13.
* gnu/packages/freedesktop.scm (waypipe)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/fusion.scm (fusion)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/games.scm (hedgewars)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/gnome.scm (gnome-builder)[inputs]: Remove clang and llvm; add
clang-13 and llvm-13.
* gnu/packages/gnustep.scm (libobjc2)[inputs]: Remove clang; add clang-13.
* gnu/packages/gnuzilla.scm (mozjs)[native-inputs]: Remove llvm; add llvm-13.
* gnu/packages/graphics.scm (openshadinglanguage)[native-inputs]: Remove clang
and llvm; add clang-13 and llvm-13.
(skia)[native-inputs]: Remove clang-toolchain; add clang-toolchain-13.
(tinygltf)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/kde-sdk.scm (kdevelop)[inputs]: Remove clang; add clang-13.
* gnu/packages/language.scm (liblouis)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/lean.scm (lean4)[inputs]: Remove llvm; add llvm-13.
* gnu/packages/lisp.scm (carp, picolisp)[inputs]: Remove clang; add clang-13.
* gnu/packages/machine-learning.scm (ctranslate2)[native-inputs]: Remove
libomp; add libomp-13.
* gnu/packages/mail.scm (stalwart)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/maths.scm (python-mathics-core)[inputs]: Remove llvm; add
llvm-13.
* gnu/packages/ocaml.scm (bap)[inputs]: Remove llvm; add llvm-13.
[native-inputs]: Remove clang; add clang-13.
[arguments]: Use this-package-input to get llvm version.
* gnu/packages/photo.scm (darktable)[inputs]: Remove libomp; add libomp-13.
[native-inputs]: Remove llvm; add llvm-13.
(ansel)[native-inputs]: Remove llvm; add llvm-13.
(photoflare)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/physics.scm (cytnx)[inputs]: Remove libomp; add libomp-13.
* gnu/packages/qt.scm (clazy)[inputs]: Remove clang and llvm; add clang-13 and
llvm-13.
* gnu/packages/rust-apps.scm (c2rust, helvum, ouch, pwmenu)
(soundcloud-tui)[native-inputs]: Remove clang; add clang-13.
* gnu/packages/rust-sources.scm (rust-ring-0.17)[native-inputs]: Remove clang;
add clang-13.
* gnu/packages/sequoia.scm (sequoia-chameleon-gnupg)
(sequoia-sq, sequoia-sqv, sequoia-wot-tools)[native-inputs]: Remove clang; add
clang-13.
* gnu/packages/text-editors.scm (parinfer-rust, parinfer-rust-emacs)[inputs]:
Remove clang; add clang-13.
* gnu/packages/virtualization.scm (xen-guest-agent)[native-inputs]: Remove
clang; add clang-13.
* gnu/packages/wm.scm (niri)[inputs]: Remove clang; add clang-13.
* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Remove llvm; add llvm-13.
(xwayland-satellite)[inputs]: Remove clang; add clang-13.

Change-Id: Ifb8f13908a9e7112466b2e966200670ddcc2f162

1 files changed, 2 insertions, 2 deletions

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 82273846b04..ac0e0d49398 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -207,7 +207,7 @@
     (build-system cargo-build-system)
     (arguments
      (list #:install-source? #f))
-    (native-inputs (list clang pkg-config))
+    (native-inputs (list clang-13 pkg-config))
     (inputs (cons* curl openssl zlib (cargo-inputs 'alignoth)))
     (home-page "https://github.com/alignoth/alignoth")
     (synopsis "Tool for creating alignment plots from bam files.")
@@ -6634,7 +6634,7 @@ other types of unwanted sequence from high-throughput sequencing reads.")
              n2p2
              gsl
              openblas
-             libomp
+             libomp-13
              eigen
              netcdf
              pnetcdf