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path: root/gnu/packages/bioinformatics.scm
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2026-06-18gnu: Remove porechop.Andreas Enge1-47/+0
2026-06-14gnu: r-pizzarr: Remove bundled c-blosc and snappy.Danny Milosavljevic1-1/+1
2026-06-09gnu: python-ete3: Fix tests.Ricardo Wurmus1-1/+8
2026-06-03gnu: subread: Update to 2.1.1.Spencer King1-2/+2
2026-05-31gnu: pigx-scrnaseq: Add patch and bump Snakemake.Nicolas Graves1-9/+19
2026-05-31gnu: mudskipper: Update dependencies.Efraim Flashner1-1/+1
2026-05-31gnu: alignoth: Build with current rust.Efraim Flashner1-2/+1
2026-05-30gnu: Remove tombo.Andreas Enge1-34/+0
2026-05-29gnu: pigx-chipseq: Use latest Snakemake.Ricardo Wurmus1-1/+1
2026-05-29gnu: pigx-bsseq: Update to 0.1.10-0.1b3a69b.Ricardo Wurmus1-71/+78
2026-05-29gnu: pigx-sars-cov-2: Use latest Snakemake.Ricardo Wurmus1-1/+1
2026-05-29gnu: Remove pending references to deprecated (gnu packages flex).Anderson Torres1-1/+1
2026-05-29gnu: pigx-rnaseq: Update to 0.1.1-0.1605b54.Ricardo Wurmus1-83/+88
2026-05-29gnu: pigx-scrnaseq: Switch to snakemake-6.Nguyễn Gia Phong1-1/+1
2026-05-28gnu: libbigwig: Modernize.Andreas Enge1-7/+7
2026-05-28gnu: Remove r-seurat-utils.Ricardo Wurmus1-64/+0
2026-05-28gnu: r-misha: Update to 5.6.23.Ricardo Wurmus1-18/+5
2026-05-28gnu: r-spectre: Update to 1.3.0.Ricardo Wurmus1-71/+69
2026-05-28gnu: r-pizzarr: Update to 0.2.0.Ricardo Wurmus1-25/+78
2026-05-28gnu: r-liana: Make compatible with latest version of SeuratObject.Ricardo Wurmus1-1/+10
2026-05-28gnu: r-liana: Replace custom phase with #:skipped-tests.Ricardo Wurmus1-16/+9
2026-05-28gnu: r-voltron: Update to 0.2.6.Ricardo Wurmus1-6/+3
2026-05-28gnu: r-zarrdataframe: Update to 0.0.0-3.f5f6715.Ricardo Wurmus1-4/+4
2026-05-28gnu: r-imagearray: Update to 1.0.0.Ricardo Wurmus1-32/+33
2026-05-28gnu: r-zarrarray: Update to 1.0.0.Ricardo Wurmus1-33/+29
2026-05-28gnu: python-biopython-1.73: Fix build with Python 3.12.Ricardo Wurmus1-1/+4
2026-05-24gnu: python-scprep: Skip more tests.Sharlatan Hellseher1-1/+10
2026-05-24gnu: pigx-scrnaseq: Fix build on Python@3.12.Sharlatan Hellseher1-0/+2
2026-05-24gnu: python-baltica: Build with snakemake@8.Sharlatan Hellseher1-1/+1
2026-05-24gnu: python-bed-reader: Fix build with Python@3.12.Nicolas Graves1-0/+1
2026-05-24gnu: python-arboreto: Fix tests with Python@3.12.Nicolas Graves1-0/+4
2026-05-24gnu: taxtastic: Fix tests.Nicolas Graves1-8/+2
2026-05-24gnu: python-pdbfixer: Update to 1.12.Nicolas Graves1-7/+11
2026-05-24gnu: python-parabam: Add a fixing patch.Nicolas Graves1-1/+11
2026-05-24gnu: python-cooler: Update to 0.10.4-0.6c2d65b.Sharlatan Hellseher1-14/+19
2026-05-24gnu: porechop: Update to 0.2.3-2.109e437.Sharlatan Hellseher1-6/+21
2026-05-24gnu: instrain: Update to 1.10.0-1.f172367.Sharlatan Hellseher1-9/+26
2026-05-24gnu: lofreq: Fix build on Python@3.12.Nicolas Graves1-1/+1
2026-05-24gnu: shorah: Update to 1.99.3.Nicolas Graves1-2/+3
2026-05-24gnu: python-peaks2utr: Update to 1.5.0.Sharlatan Hellseher1-22/+22
2026-05-24gnu: macs-3: Update to 3.0.4.Sharlatan Hellseher1-16/+26
2026-05-24gnu: packages: Drop python-pytest-runner native-inputs.Nicolas Graves1-1/+0
2026-05-24guix: build-system: Set pypi-uri in pyproject, drop python module.Nicolas Graves1-1/+0
2026-05-24gnu: python-mysql-connector-python: Relocate and rename.Nicolas Graves1-2/+2
2026-05-24gnu: python-cooler: Drop phase 'fix-pytest-config.Nicolas Graves1-7/+1
2026-05-24gnu: gdc-client: Drop phase 'fix-pytest-config.Nicolas Graves1-5/+1
2026-05-24build-system/pyproject: Remove python-pytest-cov native-input.Nicolas Graves1-3/+0
2026-05-21gnu: cgal: Update to 6.1.1.Thomas Kramer1-1/+1
2026-05-20gnu: pigx-chipseq: Update to 0.2.0.Ricardo Wurmus1-3/+3
2026-05-20gnu: idr: Update to 2.0.4.2.Ricardo Wurmus1-6/+16
generated by cgit v1.2.3 (git 2.25.1) at 2026-09-03 07:26:13 +0000